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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaattcttacatgtaaggttgtgataagatacaagcttacgaatgcctgcgtattttccaattatgggtgctcatatttgtacccctttcattgtgtagGAGCACCCAGACATTGTTGTCCATCTTGTTGATCTCATCGGCACCACCTCAATAATGGAG

Basic information

species Oryza sativa
transcript LOC_Os05g51490.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88359820|gb|CI622510.1|CI622510
EST:     TAATATGTTTGATGCTGAGAAAGACTTCCCCTCTAATGAACTATGTCCAG                         GAGCACCCAGACATTGTTGTCCATCTTGTTGATCTCATCGGCACCACCTCA
genomic: TAATATGTTTGATGCTGAGAAAGACTTCCCCTCTAATGAACTATGTCCAGgtattgctca ... cattgtgtagGAGCACCCAGACATTGTTGTCCATCTTGTTGATCTCATCGGCACCACCTCA
EST: gi|29669887|gb|CB666162.1|CB666162
EST:     TAATATGTTTGATGCTGAGAAAGACTTCCCCTCTAATGAACTATGTCCAG                         GAGCACCCAGACATTGTTGTCCATCTTGTTGATCTCATCGGCACCACCTCA
genomic: TAATATGTTTGATGCTGAGAAAGACTTCCCCTCTAATGAACTATGTCCAGgtattgctca ... cattgtgtagGAGCACCCAGACATTGTTGTCCATCTTGTTGATCTCATCGGCACCACCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctgcgtattttccaattatgggtgctcatatttgtacccctttcattgtgtagGAGCACCCAGACATTGTTGTCCATCTTGTTGATCTCATCGGCACCACCTCAATAATGGAG
                                tttgtacccctttc  CT-rich tract
       tattttccaattat  TA-rich tract