1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttcagtattaaaccatacacatttgttccttttttagcgggggaaaattaacagaagctgatgataattgcaagggacatagctccatatttacacatgcttattttacactgcttccagGTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCTTGGGAGATCGCCACCGGCAACAAGCGTCGATAGCCTGCAGGATTCTTGG
species | Oryza sativa |
transcript | LOC_Os05g49050.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAG GTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCTEST: gi|88841450|gb|CI005530.1|CI005530
genomic: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAGgttcagtatt ... ctgcttccagGTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCT
EST: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAG GTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCTEST: gi|88979639|gb|CI026025.1|CI026025
genomic: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAGgttcagtatt ... ctgcttccagGTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCT
EST: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAG GTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCTEST: gi|88537772|gb|CI466747.1|CI466747
genomic: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAGgttcagtatt ... ctgcttccagGTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCT
EST: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTTTCTTTGCACA- GTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCTEST: gi|58589567|gb|CF987875.1|CF987875
genomic: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAGgttcagtatt ... ctgcttccagGTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCT
EST: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAG GTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCTEST: gi|88218494|gb|CI218343.1|CI218343
genomic: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAGgttcagtatt ... ctgcttccagGTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCT
EST: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAG GTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCTEST: gi|88995187|gb|CI036762.1|CI036762
genomic: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAGgttcagtatt ... ctgcttccagGTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCT
EST: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAG GTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCTEST: gi|163925413|gb|EG711550.1|EG711550
genomic: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAGgttcagtatt ... ctgcttccagGTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCT
EST: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAG GTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCTEST: gi|86598497|gb|CI355114.1|CI355114
genomic: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAGgttcagtatt ... ctgcttccagGTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCT
EST: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAG GTGAAACATTGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCTEST: gi|89170224|gb|CI039501.1|CI039501
genomic: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAGgttcagtatt ... ctgcttccagGTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCT
EST: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAG GTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCTEST: gi|58668597|gb|CK057283.1|CK057283
genomic: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAGgttcagtatt ... ctgcttccagGTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCT
EST: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAG GTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCTEST: gi|186892964|gb|FG124632.1|FG124632
genomic: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAGgttcagtatt ... ctgcttccagGTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCT
EST: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCATAG GTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCTEST: gi|86887171|gb|CI325986.1|CI325986
genomic: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAGgttcagtatt ... ctgcttccagGTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCT
EST: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAG GTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCTEST: gi|86532427|gb|CI172633.1|CI172633
genomic: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAGgttcagtatt ... ctgcttccagGTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCT
EST: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAG GTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCT
genomic: AACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAGgttcagtatt ... ctgcttccagGTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCT
aattgcaagggacatagctccatatttacacatgcttattttacactgcttccagGTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCTTGGGAGATCGCCACCGGCAACAAGCGTCGATAGCCTGCAGGATTCTTGG
ctgcttcc CT-rich tract
ttattttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcagtattaaaccatacacatttgttccttttttagcgggggaaaattaacagaagctgatgataattgcaagggacatagctccatatttacacatgcttattttacactgcttccagGTGAAACATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCTTGGGAGATCGCCACCGGCAACAAGCGTCGATAGCCTGCAGGATTCTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG