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gtaggtgattcccccatgtaccttattttccaaagtagtggcatagtgcatgccttttgcttgttgtcccaacactgaattgcctaatgcatcctgaaacctctcacagACGTTGCGCCGCATGTATATTATTAATGCCGGCCAAGGCTTCAAGATGTTATGGAGCACTGTAAAATCTTTCCTAGATCCTAAAACTGCTTCAAAGATTC
species | Oryza sativa |
transcript | LOC_Os05g46720.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGATCTAATCACACGACTGCAGAAGATCGACAATNGACA-CTACCCAGAG ACGTTGCGCCGCATGTATATTATTAATEST: gi|33676922|gb|CF305161.1|CF305161
genomic: GGATCTAATCACACGACTGCAGAAGATCGACAAT-GACAACTACCCAGAGgtaggtgatt ... cctctcacagACGTTGCGCCGCATGTATATTATTAAT
EST: GGGATCTAATCACACGACTGCAGAAGATCGACAATGACAACTACCCAGAG ACGTTGCGCCGCATGTATATTATTAATGCCGGCCAAGGCTTCAAGATGTTAEST: gi|29665229|gb|CB661504.1|CB661504
genomic: GGGATCTAATCACACGACTGCAGAAGATCGACAATGACAACTACCCAGAGgtaggtgatt ... cctctcacagACGTTGCGCCGCATGTATATTATTAATGCCGGCCAAGGCTTCAAGATGTTA
EST: GGGATCTAATCACACGACTGCAGAAGATCGACAATGACAACTACCCAGAG ACGTTGCGCCGCATGTATATTATTAATGCCGGCCAAGGCTTCAAGATGTTAEST: gi|29640888|gb|CB645895.1|CB645895
genomic: GGGATCTAATCACACGACTGCAGAAGATCGACAATGACAACTACCCAGAGgtaggtgatt ... cctctcacagACGTTGCGCCGCATGTATATTATTAATGCCGGCCAAGGCTTCAAGATGTTA
EST: GGGATCTAATCACACGACTGCAGAAGATCGACAATGACAACTACCCAGAG ACGTTGCGCCGCATGTATATTEST: gi|29628535|gb|CB633546.1|CB633546
genomic: GGGATCTAATCACACGACTGCAGAAGATCGACAATGACAACTACCCAGAGgtaggtgatt ... cctctcacagACGTTGCGCCGCATGTATATT
EST: GGGATCTAATCACACGACTGCAGAAGATCGACAATGACAACTACCCAGAG ACGTTGCGCCGCATGTATATTATTAATGCCGGCCAAGGCTTCAAGATGTTA
genomic: GGGATCTAATCACACGACTGCAGAAGATCGACAATGACAACTACCCAGAGgtaggtgatt ... cctctcacagACGTTGCGCCGCATGTATATTATTAATGCCGGCCAAGGCTTCAAGATGTTA
ttttgcttgttgtcccaacactgaattgcctaatgcatcctgaaacctctcacagACGTTGCGCCGCATGTATATTATTAATGCCGGCCAAGGCTTCAAGATGTTATGGAGCACTGTAAAATCTTTCCTAGATCCTAAAACTGCTTCAAAGATTC
gcctaat putative branch site (score: 45)
cctctcac putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgattcccccatgtaccttattttccaaagtagtggcatagtgcatgccttttgcttgttgtcccaacactgaattgcctaatgcatcctgaaacctctcacagACGTTGCGCCGCATGTATATTATTAATGCCGGCCAAGGCTTCAAGATGTTATGGAGCACTGTAAAATCTTTCCTAGATCCTAAAACTGCTTCAAAGATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA