1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatttgactgacctatgaactctgatgtgagcatttgcaaagcctgagcgacttttttcatgcccccatttggactcagcaatacactcggttgcaccagGAGGTGGCCCCTGCAACAAGCTGGGAGATCTCAGAGCTTGGCTATGGAAGAACACCGGGCGCTGATCAATCCTAGCCCCCCTCACTTCAAAAGTGACTAG
species | Oryza sativa |
transcript | LOC_Os05g46360.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAG GAGGTGGCCCCTGCAACAAGCTGGGAGATCTCAGAGCTTGGCTATGGAAGAEST: gi|88503351|gb|CI430857.1|CI430857
genomic: AAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAGgtaatttgac ... gttgcaccagGAGGTGGCCCCTGCAACAAGCTGGGAGATCTCAGAGCTTGGCTATGGAAGA
EST: AAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAG GAGGTGGCCCCTGCAACAAGCTGGGAGATCTCAGAGCTTGGCTATGGAAGAEST: gi|58591325|gb|CF989633.1|CF989633
genomic: AAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAGgtaatttgac ... gttgcaccagGAGGTGGCCCCTGCAACAAGCTGGGAGATCTCAGAGCTTGGCTATGGAAGA
EST: AAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAG GAGGTGGCCCCTGCAACAAGCTGGGAGATCTCAGAGCTTGGCTATGGAAGA
genomic: AAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAGgtaatttgac ... gttgcaccagGAGGTGGCCCCTGCAACAAGCTGGGAGATCTCAGAGCTTGGCTATGGAAGA
gagcgacttttttcatgcccccatttggactcagcaatacactcggttgcaccagGAGGTGGCCCCTGCAACAAGCTGGGAGATCTCAGAGCTTGGCTATGGAAGAACACCGGGCGCTGATCAATCCTAGCCCCCCTCACTTCAAAAGTGACTAG
ttttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttgactgacctatgaactctgatgtgagcatttgcaaagcctgagcgacttttttcatgcccccatttggactcagcaatacactcggttgcaccagGAGGTGGCCCCTGCAACAAGCTGGGAGATCTCAGAGCTTGGCTATGGAAGAACACCGGGCGCTGATCAATCCTAGCCCCCCTCACTTCAAAAGTGACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT