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gtaacatgctgccattatgcatctaactatttaaagccgtattctgcttttgaaactttcagtgtttgatttgatcaatgtgagttttgtagCTCGACGATGAAACTCTGAATGATGTTATCAATATGGGGTTTGACAAGAATCAGCTAATCGAATCACTTCACAAGAGACTGCAAAACGAG
species | Oryza sativa |
transcript | LOC_Os05g45420.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGCGTTATTTAGCTGTGCCACCTCCTGACACTGCACAACAGGTTAAAAAG CTCGACGATGAAACTCTGAATGATGTTATCAATATGGGGTTTGACAAGAATEST: gi|40488690|gb|BX899031.1|BX899031
genomic: CGCGTTATTTAGCTGTGCCACCTCCTGACACTGCACAACAGGTTAAAAAGgtaacatgct ... agttttgtagCTCGACGATGAAACTCTGAATGATGTTATCAATATGGGGTTTGACAAGAAT
EST: CGCGTTATTTAGCTGTGCCACCTCCTGACACTGCACAACAGGTTAAAAAG CTCGATGATGAAACTCTGAATGATGTTATCAATATGGGGTTTGACAAGAATEST: gi|13420630|gb|AU174720.1|AU174720
genomic: CGCGTTATTTAGCTGTGCCACCTCCTGACACTGCACAACAGGTTAAAAAGgtaacatgct ... agttttgtagCTCGACGATGAAACTCTGAATGATGTTATCAATATGGGGTTTGACAAGAAT
EST: CGCGTTATTTAGCTGTGCCACCTCCTGACACTGCACAACAGGTTAAAAAG CTCGACGATGAAACTCTGAATGATGTTATCAATATGGGGTTTGACAAGAATEST: gi|38481090|gb|CF965179.1|CF965179
genomic: CGCGTTATTTAGCTGTGCCACCTCCTGACACTGCACAACAGGTTAAAAAGgtaacatgct ... agttttgtagCTCGACGATGAAACTCTGAATGATGTTATCAATATGGGGTTTGACAAGAAT
EST: GTTATTTAGCTGTGCCACCTCCTGACACTGCACAACAGTGTTAAAAAG CTCGACGATGAAACTCTGAATGATGTTATCAATATGTGGTGTTTGACAAGEST: gi|66924039|gb|CX110887.1|CX110887
genomic: GTTATTTAGCTGTGCCACCTCCTGACACTGCACAACAG-GTTAAAAAGgtaacatgct ... agttttgtagCTCGACGATGAAACTCTGAATGATGTTATCAATATG-GG-GTTTGACAAG
EST: CGCGTTATTTAGCTGTGCCACCTCCTGACACTGCACAACAGGTTAAAAAG CTCGACGATGAAACTCTGAATGATGTTATCAATATGGGGTTTGACAAGAEST: gi|29680933|gb|CB677208.1|CB677208
genomic: CGCGTTATTTAGCTGTGCCACCTCCTGACACTGCACAACAGGTTAAAAAGgtaacatgct ... agttttgtagCTCGACGATGAAACTCTGAATGATGTTATCAATATGGGGTTTGACAAGA
EST: CGCGTTATTTAGCTGTGCCACCTCCTGACACTGCACAACAGGTTAAAAAG CTCGACGATGAAACTCTGAATGATGTTATCAATATGG
genomic: CGCGTTATTTAGCTGTGCCACCTCCTGACACTGCACAACAGGTTAAAAAGgtaacatgct ... agttttgtagCTCGACGATGAAACTCTGAATGATGTTATCAATATGG
cgtattctgcttttgaaactttcagtgtttgatttgatcaatgtgagttttgtagCTCGACGATGAAACTCTGAATGATGTTATCAATATGGGGTTTGACAAGAATCAGCTAATCGAATCACTTCACAAGAGACTGCAAAACGAG
atttgat putative branch site (score: 40)
ttttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatgctgccattatgcatctaactatttaaagccgtattctgcttttgaaactttcagtgtttgatttgatcaatgtgagttttgtagCTCGACGATGAAACTCTGAATGATGTTATCAATATGGGGTTTGACAAGAATCAGCTAATCGAATCACTTCACAAGAGACTGCAAAACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA