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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttaatgcttctcttttaaccattatgcatatcagagcatcaataagcatataccttggtaaagtgtcttaacatcagctgtgattctgtaccgacagATCTCCGTGTCTTGAACAATTATGGACAGATCGAATCATTCTCTGCTTTCAGCAGTATTTACAACAATTCTGGCCTTTTTGGAATACATGCAACCACT

Basic information

species Oryza sativa
transcript LOC_Os05g44916.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g44916.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G005036_T01 (Zea mays), 3'ss of exon 7
gtaagcttaatgcttctcttttaaccattatgcatatcagagcatcaataagcatataccttggtaaagtgtcttaacatcagctgtgattctgtaccgacagATCTCCGTGTCTTGAACAATTATGGACAGATCGAATCATTCTCTGCTTTCAGCAGTATTTACAACAATTCTGGCCTTTTTGGAATACATGCAACCACT
         |||  | | | | || |||||    | ||| ||  | | |    | | || |  || | |  || |||||  | || |||| || || | ||||||||||||||||||| ||| |    |||||| |||||||||||||||||||  ||  | || |||||||| ||||||||||||||  |||||  ||||
-------gtatggctgtttataaatcattac---tgtcatagagtta-tgcaaacaaacttatgtgatgaatcctaacacgacctttgatcctatatctacagATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCAATAGCGTCTATAACAATTCGGGCCTTTTTGGAATTTATGCAGTCACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|286522|gb|D15329.1|D15329
EST:     AGGGTCCTTCTCGACCGGTGGCCCTGGGAAAGGAATGCATTCTTGGTTGT                         ATCTCCGTGTCTTGAACAATTATGGACAGATCGAATCATTCTCTGCTTTCA
genomic: AGGGTCCTTCTCGACCGGTGGCCCTGGGAAAGGAATGCATTCTTGGTTGTgtaagcttaa ... gtaccgacagATCTCCGTGTCTTGAACAATTATGGACAGATCGAATCATTCTCTGCTTTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagcatataccttggtaaagtgtcttaacatcagctgtgattctgtaccgacagATCTCCGTGTCTTGAACAATTATGGACAGATCGAATCATTCTCTGCTTTCAGCAGTATTTACAACAATTCTGGCCTTTTTGGAATACATGCAACCACT
                       tcttaac  putative branch site (score: 2)
                         ttaacat  TA-rich tract