1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtattctatccccagtattttcctctccttttagttttagccttttaggtggaccgcattaacttgtatgtattttccaacagATATATGAAAAGTTGATTTCTGGCATGTATCTTGGAGAGATAGTGCGAAGAATCTTGCTGAAGCTTGCTCATGATGCAGCTTTGTTTGGGGATGTTGTTC
species | Oryza sativa |
transcript | LOC_Os05g44760.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGAATTCGATAAAGCAATGGATTTTGAAAGCTTGAATCCTGGAGAGCAG ATATATGAAAAGTTGATTTCTGGCATGTATCTTGGAGAGATAGTGCGAAGAEST: gi|66947184|gb|AU312028.1|AU312028
genomic: CAGAATTCGATAAAGCAATGGATTTTGAAAGCTTGAATCCTGGAGAGCAGgtattctatc ... tttccaacagATATATGAAAAGTTGATTTCTGGCATGTATCTTGGAGAGATAGTGCGAAGA
EST: CAGAATTCGATAAAGCAATGGATTTTGAAAGCTTGAATCCTGGAGAGCAG ATATATGAAAAGTTGATTTCTGGCATGTATCTTGGAGAGATAGTGCGAAGAEST: gi|58695929|gb|CK084616.1|CK084616
genomic: CAGAATTCGATAAAGCAATGGATTTTGAAAGCTTGAATCCTGGAGAGCAGgtattctatc ... tttccaacagATATATGAAAAGTTGATTTCTGGCATGTATCTTGGAGAGATAGTGCGAAGA
EST: CAGAATTCGATAAAGCAATGGATTTTGAAAGCTTGAATCCTGGAGAGCAG ATATATGAAAAGTTGATTTCTGGCATGTATCTTGGAGAGATAGTGCGAAGAEST: gi|27576640|gb|CA999334.1|CA999334
genomic: CAGAATTCGATAAAGCAATGGATTTTGAAAGCTTGAATCCTGGAGAGCAGgtattctatc ... tttccaacagATATATGAAAAGTTGATTTCTGGCATGTATCTTGGAGAGATAGTGCGAAGA
EST: CTTGAATCCTGGAGAGCAG ATATATGAAAAGTTGATTTCTGGCATGTATCTTGGAGAGATAGTGCGAAGA
genomic: CTTGAATCCTGGAGAGCAGgtattctatc ... tttccaacagATATATGAAAAGTTGATTTCTGGCATGTATCTTGGAGAGATAGTGCGAAGA
ttttagttttagccttttaggtggaccgcattaacttgtatgtattttccaacagATATATGAAAAGTTGATTTCTGGCATGTATCTTGGAGAGATAGTGCGAAGAATCTTGCTGAAGCTTGCTCATGATGCAGCTTTGTTTGGGGATGTTGTTC
cattaac putative branch site (score: 35)
tattttcc putative PPT
tatgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattctatccccagtattttcctctccttttagttttagccttttaggtggaccgcattaacttgtatgtattttccaacagATATATGAAAAGTTGATTTCTGGCATGTATCTTGGAGAGATAGTGCGAAGAATCTTGCTGAAGCTTGCTCATGATGCAGCTTTGTTTGGGGATGTTGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT