1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cattggaggaatatgtaatggttgcctttttttttgtttttgaatttggaacatctttttgttgaacttactgtgcgttttattatttaattaaaaacagGCTTGCTGAATCGGCATCTTCTGAGCTTCACTTGTCTGGTTGGGTGGATGATGTCCGTAATTTCATGCACACTATAAAGAGACGCCGTCTACAAAATACA
species | Oryza sativa |
transcript | LOC_Os05g43480.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GACAGTTCTTCCTTGAAGCACCATCTTGAAGAAGGGAAGTTTAAGGAAAT GCTTGCTGAATCGGCATCTTCTGAGCTTCACTTGTCTGGTTGGGTGGATGAEST: gi|29671014|gb|CB667289.1|CB667289
genomic: GACAGTTCTTCCTTGAAGCACCATCTTGAAGAAGGGAAGTTTAAGGAAATgtaagtctct ... ttaaaaacagGCTTGCTGAATCGGCATCTTCTGAGCTTCACTTGTCTGGTTGGGTGGATGA
EST: GACAGTTCTTCCTTGAAGCACCATCTTGAAGAAGGGAAGTTTAAGGAAAT GCTTGCTGAATCGGCATCTTCTGAGCTTCACTTGTCTGGTTGGGTGGATGAEST: gi|86858242|gb|CI271127.1|CI271127
genomic: GACAGTTCTTCCTTGAAGCACCATCTTGAAGAAGGGAAGTTTAAGGAAATgtaagtctct ... ttaaaaacagGCTTGCTGAATCGGCATCTTCTGAGCTTCACTTGTCTGGTTGGGTGGATGA
EST: AGAAGGGAAGTTTAAGGAAAT GCTTGCTGAATCGGCATCTTCTGAGCTTCACTTGTCTGGTTGGGTGGATGAEST: gi|88224058|gb|CI223907.1|CI223907
genomic: AGAAGGGAAGTTTAAGGAAATgtaagtctct ... ttaaaaacagGCTTGCTGAATCGGCATCTTCTGAGCTTCACTTGTCTGGTTGGGTGGATGA
EST: GACAGTTCTTCCTTGAAGCACCATCTTGAAGAAGGGAAGTTTAAGGAAAT GCTTGCTGAATCGGCATCTTCTGAGCTTCACTTGTCTGGTTGGGTGGATGAEST: gi|86493022|gb|CI135655.1|CI135655
genomic: GACAGTTCTTCCTTGAAGCACCATCTTGAAGAAGGGAAGTTTAAGGAAATgtaagtctct ... ttaaaaacagGCTTGCTGAATCGGCATCTTCTGAGCTTCACTTGTCTGGTTGGGTGGATGA
EST: GACAGTTCTTCCTTGAAGCACCATCTTGAAGAAGGGAAGTTTAAGGAAAT GCTTGCTGAATCGGCATCTTCTGAGCTTCACTTGTCTGGTTGGGTGGATGA
genomic: GACAGTTCTTCCTTGAAGCACCATCTTGAAGAAGGGAAGTTTAAGGAAATgtaagtctct ... ttaaaaacagGCTTGCTGAATCGGCATCTTCTGAGCTTCACTTGTCTGGTTGGGTGGATGA
ttggaacatctttttgttgaacttactgtgcgttttattatttaattaaaaacagGCTTGCTGAATCGGCATCTTCTGAGCTTCACTTGTCTGGTTGGGTGGATGATGTCCGTAATTTCATGCACACTATAAAGAGACGCCGTCTACAAAATACA
ttttattatttaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattggaggaatatgtaatggttgcctttttttttgtttttgaatttggaacatctttttgttgaacttactgtgcgttttattatttaattaaaaacagGCTTGCTGAATCGGCATCTTCTGAGCTTCACTTGTCTGGTTGGGTGGATGATGTCCGTAATTTCATGCACACTATAAAGAGACGCCGTCTACAAAATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - atatgta
- - - - - - - - - - - tgccttt
- - - - - - - - - - - - - - - - - -gtttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttactg