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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gctgaggtaaccaagtcccagaagtcgcagtcgaagggtgccgccccgaggggttccaagggcccgaagattggtggtggtggtggaaagcgctgaagATTTCTTGATCCCCAGGAAAGGGTCGCCTGGTTCTCGCCGGCTGTCTAAATCGTATCTCATCAAAAGCTACCCTGTAGAACCTCTGTTAAATTAGCACTA

Basic information

species Oryza sativa
transcript LOC_Os05g40820.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g40820.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G074898_T01 (Zea mays), 3'ss of exon 5
------------------gctgaggtaaccaagtcccagaagtcgcagtcgaagggtgccgccccgaggggtt-ccaagggcccgaagattggtg---gtggtggtggaaagcgctgaagATTTCTTGATCCCCAGGAAAGGGTCGCCTGGTTCTCGCCGGCTGTCTAAATCGT----ATCTCATCAAAAGCTACCCTGTAGAACCTCTGTTAAATTAGCACTA--------------
                    | |  |  | | | |          ||   |   ||||  |||   |     |     |  | |||   ||  ||         ||| ||  |  |  |  |  |     ||  |      | ||     |  |     |     | |    |     |   |    || |||    |||  ||   |    |       || |              
gtaatgtttacatcctccatttatatgcctatgacagcagctaaccatctgtttggtgttgccaataaaatctgttttgctctcgagtgttactgtacacaaacgtgcaatacatttgaactgccgctgaccttacagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAGGCGAAGAAGGCTGAGGTGTCCAAGTCCCAGAAGGCGCAGACGAAGGGTGCTGTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86417460|gb|CI031669.1|CI031669
EST:     AGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAAG                         ATTTCTTGATCCCCAGGAAAGGGTCGCCTGGTTCTCGCCGGCTGTCTAAAT
genomic: AGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAAGgctgaggtaa ... agcgctgaagATTTCTTGATCCCCAGGAAAGGGTCGCCTGGTTCTCGCCGGCTGTCTAAAT