1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggtcgttctgttcatgatatccagaatgtgcagcttatcaatgttgcttcaatgcactaaaaaggtcgtctttctgataattcgttcttattaactgcagTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTTTAGTGCCAGCGGCCTGACACCTT
species | Oryza sativa |
transcript | LOC_Os05g40260.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAG TTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAEST: gi|86865983|gb|CI336760.1|CI336760
genomic: TTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGgtagaaaacc ... ttaactgcagTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCA
EST: TTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAG TTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAEST: gi|4716609|gb|AU057725.1|AU057725
genomic: TTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGgtagaaaacc ... ttaactgcagTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCA
EST: TTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAG TTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAEST: gi|88455089|gb|CI516727.1|CI516727
genomic: TTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGgtagaaaacc ... ttaactgcagTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCA
EST: TTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAG TTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAEST: gi|88452543|gb|CI558204.1|CI558204
genomic: TTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGgtagaaaacc ... ttaactgcagTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCA
EST: TTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAG TTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAEST: gi|89167805|gb|CI021504.1|CI021504
genomic: TTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGgtagaaaacc ... ttaactgcagTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCA
EST: TTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAG TTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAEST: gi|88456659|gb|CI544596.1|CI544596
genomic: TTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGgtagaaaacc ... ttaactgcagTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCA
EST: TTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAG TTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAEST: gi|88995783|gb|CI037135.1|CI037135
genomic: TTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGgtagaaaacc ... ttaactgcagTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCA
EST: TTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAG TTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAEST: gi|89189069|gb|CI012219.1|CI012219
genomic: TTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGgtagaaaacc ... ttaactgcagTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCA
EST: TTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAG TTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCA
genomic: TTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGgtagaaaacc ... ttaactgcagTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCA
gcttcaatgcactaaaaaggtcgtctttctgataattcgttcttattaactgcagTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTTTAGTGCCAGCGGCCTGACACCTT
tattaac putative branch site (score: 30)
ttcttatt CT-rich tract
ttcttattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcgttctgttcatgatatccagaatgtgcagcttatcaatgttgcttcaatgcactaaaaaggtcgtctttctgataattcgttcttattaactgcagTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTTTAGTGCCAGCGGCCTGACACCTT
- - - - -gttcatg
- - - - - - - - - - - - - -gtgcagc
- - - - - - - - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - -caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaaaaag