1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaaaagttttcccaggggtaatatgaaactctttttcattttaccttttgagtgttccatattagctactgatgcaaatcctggctgccatgttaactttgcacctttgaattcaactattgtgttctctttccatattctgacatatcatactccagAAATTAGGTTTTGCGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGGGTAAATGTACTAATCGAAAAAGAAAACCAGGATGGACAATGGGCATATGGTA
species | Oryza sativa |
transcript | LOC_Os05g39230.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGATTTAACACTGATGGCATTGGCAGGAATAGGCCTGCGTCACGATAAG AAATTAGGTTTTGCGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGGEST: gi|8856717|gb|AU094035.1|AU094035
genomic: CTGATTTAACACTGATGGCATTGGCAGGAATAGGCCTGCGTCACGATAAGgtaaaagttt ... catactccagAAATTAGGTTTTGCGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGG
EST: CTGATTTAACACTGATGGCATTGGCAGGAATAGGCCTGCGTCACGATAAG AAATTAGGTTTTGCGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGGGTAEST: gi|29689746|gb|CB686021.1|CB686021
genomic: CTGATTTAACACTGATGGCATTGGCAGGAATAGGCCTGCGTCACGATAAGgtaaaagttt ... catactccagAAATTAGGTTTTGCGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGGGTA
EST: CTGATTTAACACTGATGGCATTGGCAGGAATAGGCCTGCGTCACGATAAG AAATTAGGTTTTGCGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGGGTA
genomic: CTGATTTAACACTGATGGCATTGGCAGGAATAGGCCTGCGTCACGATAAGgtaaaagttt ... catactccagAAATTAGGTTTTGCGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGGGTA
cctttgaattcaactattgtgttctctttccatattctgacatatcatactccagAAATTAGGTTTTGCGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGGGTAAATGTACTAATCGAAAAAGAAAACCAGGATGGACAATGGGCATATGGTA
ttctgac putative branch site (score: 2)
atatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaagttttcccaggggtaatatgaaactctttttcattttaccttttgagtgttccatattagctactgatgcaaatcctggctgccatgttaactttgcacctttgaattcaactattgtgttctctttccatattctgacatatcatactccagAAATTAGGTTTTGCGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGGGTAAATGTACTAATCGAAAAAGAAAACCAGGATGGACAATGGGCATATGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA