1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcacgcagctcgccggcaggcggcagcacggcgtgaaggtcatatctgcgcaacatcaactgacgtacagcgtgtttgatttttttttttatgcaaacagAATGCGGCGGAGAAGCCGCCGCCGTTCCTGCCGAGCTGGAGCGGGATGTTCGTGGTGAACGTGTTCGTGGTGGCGTGGGTGCTGGTGGTCGGGTTCGGCC
species | Oryza sativa |
transcript | LOC_Os05g37470.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCCCTCCCTCTCCCACATCCTCACGTACCGCTCCGCCTCCGCCAGATTG AATGCGGCGGAGAAGCCGCCGCCGTTCCTGCCGAGCTGGAGCGGGATGTTCEST: gi|29638465|gb|CB643474.1|CB643474
genomic: TCCCCTCCCTCTCCCACATCCTCACGTACCGCTCCGCCTCCGCCAGATTGgtaagtgtgt ... atgcaaacagAATGCGGCGGAGAAGCCGCCGCCGTTCCTGCCGAGCTGGAGCGGGATGTTC
EST: TCCCCTCCCTCTCCCACATCCTCACGTACCGCTCCGCCTCCGCCAGATTG AATGCGGCGGAGAAGCCGCCGCCGTTCCTGCCGAGCTGGAGCGGGATGTTCEST: gi|88198737|gb|CI198587.1|CI198587
genomic: TCCCCTCCCTCTCCCACATCCTCACGTACCGCTCCGCCTCCGCCAGATTGgtaagtgtgt ... atgcaaacagAATGCGGCGGAGAAGCCGCCGCCGTTCCTGCCGAGCTGGAGCGGGATGTTC
EST: TCCCCTCCCTCTCCCACATCCTCACGTACCGCTCCGCCTCCGCCAGATTG AATGCGGCGGAGAAGCCGCCGCCGTTCCTGCCGAGCTGGAGCGGGATGTTCEST: gi|86498402|gb|CI141035.1|CI141035
genomic: TCCCCTCCCTCTCCCACATCCTCACGTACCGCTCCGCCTCCGCCAGATTGgtaagtgtgt ... atgcaaacagAATGCGGCGGAGAAGCCGCCGCCGTTCCTGCCGAGCTGGAGCGGGATGTTC
EST: TCCCCTCCCTCTCCCACATCCTCACGTACCGCTCCGCCTCCGCCAGATTG AATGCGGCGGAGAAGCCGCCGCCGTTCCTGCCGAGCTGGAGCGGGATGTTCEST: gi|87039667|gb|CI194289.1|CI194289
genomic: TCCCCTCCCTCTCCCACATCCTCACGTACCGCTCCGCCTCCGCCAGATTGgtaagtgtgt ... atgcaaacagAATGCGGCGGAGAAGCCGCCGCCGTTCCTGCCGAGCTGGAGCGGGATGTTC
EST: TCCCCTCCCTCTCCCACATCCTCACGTACCGCTCCGCCTCCGCCAGATTG AATGCGGCGGAGAAGCCGCCGCCGTTCCTGCCGAGCTGGAGCGGGATGTTCEST: gi|86828578|gb|CI278668.1|CI278668
genomic: TCCCCTCCCTCTCCCACATCCTCACGTACCGCTCCGCCTCCGCCAGATTGgtaagtgtgt ... atgcaaacagAATGCGGCGGAGAAGCCGCCGCCGTTCCTGCCGAGCTGGAGCGGGATGTTC
EST: ACGTACCGCTCCGCCTCCGCCAGATTG AATGCGGCGGAGAAGCCGCCGCCGTTCCTGCCGAGCTGGAGCGGGATGTTCEST: gi|86599882|gb|CI256044.1|CI256044
genomic: ACGTACCGCTCCGCCTCCGCCAGATTGgtaagtgtgt ... atgcaaacagAATGCGGCGGAGAAGCCGCCGCCGTTCCTGCCGAGCTGGAGCGGGATGTTC
EST: TCCCCTCCCTCTCCCACATCCTCACGTACCGCTCCGCCTCCGCCAGATTG AATGCGGCGGAGAAGCCGCCGCCGTTCCTGCCGAGCTGGAGCGGGATGTTC
genomic: TCCCCTCCCTCTCCCACATCCTCACGTACCGCTCCGCCTCCGCCAGATTGgtaagtgtgt ... atgcaaacagAATGCGGCGGAGAAGCCGCCGCCGTTCCTGCCGAGCTGGAGCGGGATGTTC
ctgcgcaacatcaactgacgtacagcgtgtttgatttttttttttatgcaaacagAATGCGGCGGAGAAGCCGCCGCCGTTCCTGCCGAGCTGGAGCGGGATGTTCGTGGTGAACGTGTTCGTGGTGGCGTGGGTGCTGGTGGTCGGGTTCGGCC
tttttttttttatgc CT-rich tract
tttgattttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacgcagctcgccggcaggcggcagcacggcgtgaaggtcatatctgcgcaacatcaactgacgtacagcgtgtttgatttttttttttatgcaaacagAATGCGGCGGAGAAGCCGCCGCCGTTCCTGCCGAGCTGGAGCGGGATGTTCGTGGTGAACGTGTTCGTGGTGGCGTGGGTGCTGGTGGTCGGGTTCGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- -cgcagct
- - - - - - - ggcaggc
- - - - - - - - - - - -cagcacg
- - - - - - - - - - - - - - - - - - - - - tatctgc
- - - - - - - - - - - - - - - - - - - - - - - - - -aacatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcgtg