Sequence
atgc intronic sequence ATGC exonic sequencegtctgtgattcaacaatgcaattcttgttcttaattggattggtcatggatcaaaacaaaatggccatttttggcacctgtactgtactcttctttttgtgtagATACCAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAATGCGAAAAATTGGGATGCTCCTACAGCGAA
Basic information
species | Oryza sativa |
transcript | LOC_Os05g36270.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os05g36270.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G322953_T03 (Zea mays), 3'ss of exon 5
gtctgtgattcaacaa----tgcaattcttgttcttaattg--gattggt---catggat-------caaaacaaaatggccat-------ttttggcacc-tgtactgtac--------tcttctttttgtgtagATACCAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAATGCGAAAAATTGGGATGCTCCTACAGCGAA
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gttaatgataaaaaaaactccacacttcttttctttcctggctgatcgatacccctggttagcactataaaacaaaatggtactacttgagtttgggtatcacgttttgtgcgtgcttcgttcttttcttgtgcagATACCAAGGAAAGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAAAACTGGGATGGGCCTACAGCCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29670800|gb|CB667075.1|CB667075EST: CCCTTGATCCTTCCCTTGGGGAGTTCATTCTGACTCATCCAAACATCAAG ATACCAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAATGCGAAAAAT
genomic: CCCTTGATCCTTCCCTTGGGGAGTTCATTCTGACTCATCCAAACATCAAGgtctgtgatt ... ttttgtgtagATACCAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAATGCGAAAAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcaaaacaaaatggccatttttggcacctgtactgtactcttctttttgtgtagATACCAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAATGCGAAAAATTGGGATGCTCCTACAGCGAA
ctgtactcttcttttt CT-rich tract
aacaaaat TA-rich tract