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...atggcaaaaaaggatcctcctttcaataacattgaaattgtatcatgcaagtcacttctttgtttactggtcttttaagttcattcacttcttatttcagCGCTCTCGGTGGAGTTTACCAGATCTCAAGTCGTTGCATCGATCCCAGGATTTTTCTTTTGCATATGGTATGCTGCGAAGAAGCATTGGCTAGCAAACAA
species | Oryza sativa |
transcript | LOC_Os05g36070.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAAGAATGGAACGATAATGCCATTGTTTGGCGTGCTCCACTTTTCCACT CGCTCTCGGTGGAGTTTACCAGATCTCAAGTCGTTGCATCGATCCCAGGATEST: gi|29623970|gb|CB628981.1|CB628981
genomic: AAAAGAATGGAACGATAATGCCATTGTTTGGCGTGCTCCACTTTTCCACTgtatgactca ... cttatttcagCGCTCTCGGTGGAGTTTACCAGATCTCAAGTCGTTGCATCGATCCCAGGAT
EST: AAAAGAATGGAACGATAATGCCATTGTTTGGCGTGCTCCACTTTTCCACT CGCTCTCGGTGGAGTTTACCAGATCTCAAGTCGTTGCATCGATCCCAGGATEST: gi|29623040|gb|CB628051.1|CB628051
genomic: AAAAGAATGGAACGATAATGCCATTGTTTGGCGTGCTCCACTTTTCCACTgtatgactca ... cttatttcagCGCTCTCGGTGGAGTTTACCAGATCTCAAGTCGTTGCATCGATCCCAGGAT
EST: AAAAGAATGGAACGATAATGCCATTGTTTGGCGTGCTCCACTTTTCCACT CGCTCTCGGTGGAGTTTACCAGATCTCAAGTCGTTGCATCGATCCCAGGATEST: gi|29623889|gb|CB628900.1|CB628900
genomic: AAAAGAATGGAACGATAATGCCATTGTTTGGCGTGCTCCACTTTTCCACTgtatgactca ... cttatttcagCGCTCTCGGTGGAGTTTACCAGATCTCAAGTCGTTGCATCGATCCCAGGAT
EST: AAAAGAATGGAACGATAATGCCATTGTTTGGCGTGCTCCACTTTTCCACT CGCTCTCGGTGGAGTTTACCAGATCTCAAGTCGTTGCATCGATCCCAGGATEST: gi|87005300|gb|CI285522.1|CI285522
genomic: AAAAGAATGGAACGATAATGCCATTGTTTGGCGTGCTCCACTTTTCCACTgtatgactca ... cttatttcagCGCTCTCGGTGGAGTTTACCAGATCTCAAGTCGTTGCATCGATCCCAGGAT
EST: AAAAGAATGGAACGATAATGCCATTGTTTGGCGTGCTCCACTTTTCCACT CGCTCTCGGTGGAGTTTACCAGATCTCAAGTCGTTGCATCGATCCCAGGATEST: gi|29623038|gb|CB628049.1|CB628049
genomic: AAAAGAATGGAACGATAATGCCATTGTTTGGCGTGCTCCACTTTTCCACTgtatgactca ... cttatttcagCGCTCTCGGTGGAGTTTACCAGATCTCAAGTCGTTGCATCGATCCCAGGAT
EST: AAAAGAATGGAACGATAATGCCATTGTTTGGCGTGCTCCACTTTTCCACT CGCTCTCGGTGGAGTTTACCAGATCTCAAGTCGTTGCATCGATCCCAGGAT
genomic: AAAAGAATGGAACGATAATGCCATTGTTTGGCGTGCTCCACTTTTCCACTgtatgactca ... cttatttcagCGCTCTCGGTGGAGTTTACCAGATCTCAAGTCGTTGCATCGATCCCAGGAT
tgcaagtcacttctttgtttactggtcttttaagttcattcacttcttatttcagCGCTCTCGGTGGAGTTTACCAGATCTCAAGTCGTTGCATCGATCCCAGGATTTTTCTTTTGCATATGGTATGCTGCGAAGAAGCATTGGCTAGCAAACAA
ttcacttcttatttc CT-rich tract
ttttaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggcaaaaaaggatcctcctttcaataacattgaaattgtatcatgcaagtcacttctttgtttactggtcttttaagttcattcacttcttatttcagCGCTCTCGGTGGAGTTTACCAGATCTCAAGTCGTTGCATCGATCCCAGGATTTTTCTTTTGCATATGGTATGCTGCGAAGAAGCATTGGCTAGCAAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC