1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgccatcagaagattcagaaacttggacttcatgcctgaaacagagcagtattcttgacaccttaaaattcacctgtcttttgcctgtccacactgcagGATCGTCGGACTCCGCGGGCGAGCCCACTGGACAGAACAAGAACATATGCGAAGCCGGTGACGGAGTCGGGCGACGAGGGCAACACCACCACAGCTGCCA
species | Oryza sativa |
transcript | LOC_Os05g36050.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGGGCATGTCATCCATATGCTCGAAGTCGATGACTTCCCATACCGAGAA GATCGTCGGACTCCGCGGGCGAGCCCACTGGACAGAACAAGAACATATGCGEST: gi|89194520|gb|CI116957.1|CI116957
genomic: TGGGGCATGTCATCCATATGCTCGAAGTCGATGACTTCCCATACCGAGAAgtgagccttc ... cacactgcagGATCGTCGGACTCCGCGGGCGAGCCCACTGGACAGAACAAGAACATATGCG
EST: TGGGGCATGTCATCCATATGCTCGAAGTCGATGACTTCCCATACCGAGAA GATCGTCGGACTCCGCGGGCGAGCCCACTGGACAGAACAAGAACATATGCGEST: gi|58685024|gb|CK073711.1|CK073711
genomic: TGGGGCATGTCATCCATATGCTCGAAGTCGATGACTTCCCATACCGAGAAgtgagccttc ... cacactgcagGATCGTCGGACTCCGCGGGCGAGCCCACTGGACAGAACAAGAACATATGCG
EST: TGGGGCATGTCATCCATATGCTCGAAGTCGATGACTTCCCATACCGAGAA GATCGTCGGACTCCGCGGGCGAGCCCACTGGACAGAACAAGAACATATGCGEST: gi|25806771|gb|CA762732.1|CA762732
genomic: TGGGGCATGTCATCCATATGCTCGAAGTCGATGACTTCCCATACCGAGAAgtgagccttc ... cacactgcagGATCGTCGGACTCCGCGGGCGAGCCCACTGGACAGAACAAGAACATATGCG
EST: TGGGGCATGTCATCCATATGCTCGAAGTCAATGACTTCCCATACCGAGAA GATCGTCGGACTCCGCGGGCGAGCCCACTGGACAGAACAAGAACATATGCG
genomic: TGGGGCATGTCATCCATATGCTCGAAGTCGATGACTTCCCATACCGAGAAgtgagccttc ... cacactgcagGATCGTCGGACTCCGCGGGCGAGCCCACTGGACAGAACAAGAACATATGCG
agcagtattcttgacaccttaaaattcacctgtcttttgcctgtccacactgcagGATCGTCGGACTCCGCGGGCGAGCCCACTGGACAGAACAAGAACATATGCGAAGCCGGTGACGGAGTCGGGCGACGAGGGCAACACCACCACAGCTGCCA
tcttgac putative branch site (score: 7)
tcttttgcctgtcc putative PPT
ttaaaattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgccatcagaagattcagaaacttggacttcatgcctgaaacagagcagtattcttgacaccttaaaattcacctgtcttttgcctgtccacactgcagGATCGTCGGACTCCGCGGGCGAGCCCACTGGACAGAACAAGAACATATGCGAAGCCGGTGACGGAGTCGGGCGACGAGGGCAACACCACCACAGCTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
-tgccatc
- - - - - - - - cagaaac
- - - - - - - - - - - - - - -ttcatgc
- - - - - - - - - - - - - - - - - - - gaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - -attcttg