1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttcaaacgtttgagcaattcaccaatttgtattgtcagaatgcaagattcagacctaatcatgctgcgagatcttgtgtgttttgagcaaagaatgtaggaaaaagagagagagagagagagagagattctgttttctgaaactgttttcttgtgaacaattgagcagATCAGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCATCAGCGTCGAGCAAAGCTTGTCACAG
species | Oryza sativa |
transcript | LOC_Os05g29974.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGACCCCATCAAGCGCGAAAAG ATCAGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGEST: gi|58609664|gb|CK037697.1|CK037697
genomic: AGACCCCATCAAGCGCGAAAAGgttcaaacgt ... aattgagcagATCAGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCG
EST: CCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAAGCGCGAAAAG ATCAGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGEST: gi|38469389|gb|CF953520.1|CF953520
genomic: CCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAAGCGCGAAAAGgttcaaacgt ... aattgagcagATCAGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCG
EST: CCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAAGCGCGAAAAG ATCAGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGEST: gi|29656345|gb|CB652620.1|CB652620
genomic: CCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAAGCGCGAAAAGgttcaaacgt ... aattgagcagATCAGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCG
EST: CCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAAGCGCGAAAAG ATCAGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCG
genomic: CCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAAGCGCGAAAAGgttcaaacgt ... aattgagcagATCAGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCG
gagagagagagagattctgttttctgaaactgttttcttgtgaacaattgagcagATCAGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCATCAGCGTCGAGCAAAGCTTGTCACAG
ttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcaaacgtttgagcaattcaccaatttgtattgtcagaatgcaagattcagacctaatcatgctgcgagatcttgtgtgttttgagcaaagaatgtaggaaaaagagagagagagagagagagagattctgttttctgaaactgttttcttgtgaacaattgagcagATCAGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCATCAGCGTCGAGCAAAGCTTGTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG