1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tgcaatccctaatgatgttgccaggtgcaactgtctcaacaatcattgtgtcatgcaaaatgtatctcatgtatttactgacggcaacgatttcatccagGTCATTACTCAAATTTGGGCACTGTTGTTAGCAGGGCTTGGCCTGGGTGCTCTGTTAGATGTATGG
species | Oryza sativa |
transcript | LOC_Os05g28200.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAAATGAACCTTACCGTCCTATTCCTTCAGGCGCTATATCAGAAAATGAG GTCATTACTCAAATTTGGGCACTGTTGTTAGCAGGGCTTGGCCTGGGTGCTEST: gi|58693221|gb|CK081908.1|CK081908
genomic: TAAATGAACCTTACCGTCCTATTCCTTCAGGCGCTATATCAGAAAATGAGgtatgccaat ... tttcatccagGTCATTACTCAAATTTGGGCACTGTTGTTAGCAGGGCTTGGCCTGGGTGCT
EST: TAAATGAACCTTACCGTCCTATTCCTTCAGGCGCTATATCAGAAAATGAG GTCATTACTCAAATTTGGGCACTGTTGTTAGCAGGGCTTGGCCTGGGTGCTEST: gi|702348|gb|D48639.1|D48639
genomic: TAAATGAACCTTACCGTCCTATTCCTTCAGGCGCTATATCAGAAAATGAGgtatgccaat ... tttcatccagGTCATTACTCAAATTTGGGCACTGTTGTTAGCAGGGCTTGGCCTGGGTGCT
EST: TAAATGAACCTTACCGTCCTATTCCTTCAGGCGCTATATCAGAAAATGAG GTCATTACTCAAATTTGGGCACTGTTGTTAGCAGGGCTTGGCCTGGGTGCT
genomic: TAAATGAACCTTACCGTCCTATTCCTTCAGGCGCTATATCAGAAAATGAGgtatgccaat ... tttcatccagGTCATTACTCAAATTTGGGCACTGTTGTTAGCAGGGCTTGGCCTGGGTGCT
ttgtgtcatgcaaaatgtatctcatgtatttactgacggcaacgatttcatccagGTCATTACTCAAATTTGGGCACTGTTGTTAGCAGGGCTTGGCCTGGGTGCTCTGTTAGATGTATGG
tactgac putative branch site (score: 46)
tttcatcc putative PPT
aaaatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcaatccctaatgatgttgccaggtgcaactgtctcaacaatcattgtgtcatgcaaaatgtatctcatgtatttactgacggcaacgatttcatccagGTCATTACTCAAATTTGGGCACTGTTGTTAGCAGGGCTTGGCCTGGGTGCTCTGTTAGATGTATGG
- - - - - - - -tgttgcc
- - - - - - - - - - - - gtgcaac
- - - - - - - - - - - - - - - - - - caacaat
- - - - - - - - - - - - - - - - - - - - - - - - - tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttactga