1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtagaatctcttcaatgttccactgtctttctgttattgtgtttgtctataactgtatggtgtcacagGCTGGAGACATCGATCACTTGGCAGCAACATTTCTTCTTTGTCACAATATATCGCATGGAATCAACTTAAGGAAATCTCCTGTGCTTCAATATCTATACT
species | Oryza sativa |
transcript | LOC_Os05g28180.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGAATCAAAAGGGATGACCACAATCAAATTCCGTCCACATGCTGGCGAG GCTGGAGACATCGATCACTTGGCAGCAACATTTCTTCTTTGTCACAATATAEST: gi|27548799|gb|CA767547.2|CA767547
genomic: GTGAATCAAAAGGGATGACCACAATCAAATTCCGTCCACATGCTGGCGAGgtagaatctc ... ggtgtcacagGCTGGAGACATCGATCACTTGGCAGCAACATTTCTTCTTTGTCACAATATA
EST: GGGATGACCACAAT-NAATTCCGTCC-CATGCTGGCGAG GCTGGAGACATCGATCACTTGGCAGCAACATTTCTTCTTTGTCACAATATAEST: gi|58687285|gb|CK075972.1|CK075972
genomic: GGGATGACCACAATCAAATTCCGTCCACATGCTGGCGAGgtagaatctc ... ggtgtcacagGCTGGAGACATCGATCACTTGGCAGCAACATTTCTTCTTTGTCACAATATA
EST: TGAATCAAAAGGGATGACCACAATCAAATTCCGTCCCACATGCTGGCGAG GCTGGAGACATCGATCACTTGGCAGCAACATTTCTTCTTTGTC
genomic: TGAATCAAAAGGGATGACCACAATCAAATTCCGTCC-ACATGCTGGCGAGgtagaatctc ... ggtgtcacagGCTGGAGACATCGATCACTTGGCAGCAACATTTCTTCTTTGTC
aatgttccactgtctttctgttattgtgtttgtctataactgtatggtgtcacagGCTGGAGACATCGATCACTTGGCAGCAACATTTCTTCTTTGTCACAATATATCGCATGGAATCAACTTAAGGAAATCTCCTGTGCTTCAATATCTATACT
ctataac putative branch site (score: 3)
tgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaatctcttcaatgttccactgtctttctgttattgtgtttgtctataactgtatggtgtcacagGCTGGAGACATCGATCACTTGGCAGCAACATTTCTTCTTTGTCACAATATATCGCATGGAATCAACTTAAGGAAATCTCCTGTGCTTCAATATCTATACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA