1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtattgtccattttctacatgctatgacatgaatgtttctgcatgatccagcagtaatcctatatgtgaatatttttttcccggctcctgcaacattagttcagcttgatatactcagaaaatgcacattttccattgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCTGCTTATCCTACGCCAGTGTGCGAGAAGAAATGCAAGGTGCAGAACCAAG
species | Oryza sativa |
transcript | LOC_Os05g24550.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAG TGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCTEST: gi|29666315|gb|CB662590.1|CB662590
genomic: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAGgtattgtcca ... tgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
EST: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAG TGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCTEST: gi|29680417|gb|CB676692.1|CB676692
genomic: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAGgtattgtcca ... tgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
EST: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAG TGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCTEST: gi|29658207|gb|CB654482.1|CB654482
genomic: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAGgtattgtcca ... tgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
EST: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAG TGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCTEST: gi|29686790|gb|CB683065.1|CB683065
genomic: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAGgtattgtcca ... tgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
EST: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAG TGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCTEST: gi|29639549|gb|CB644558.1|CB644558
genomic: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAGgtattgtcca ... tgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
EST: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAG TGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCTEST: gi|58609130|gb|CK037163.1|CK037163
genomic: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAGgtattgtcca ... tgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
EST: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAG TGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCTEST: gi|58610249|gb|CK038121.1|CK038121
genomic: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAGgtattgtcca ... tgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
EST: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAG TGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
genomic: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAGgtattgtcca ... tgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
aacattagttcagcttgatatactcagaaaatgcacattttccattgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCTGCTTATCCTACGCCAGTGTGCGAGAAGAAATGCAAGGTGCAGAACCAAG
gcttgat putative branch site (score: 5)
ttttccattgtttt putative PPT
ttgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtccattttctacatgctatgacatgaatgtttctgcatgatccagcagtaatcctatatgtgaatatttttttcccggctcctgcaacattagttcagcttgatatactcagaaaatgcacattttccattgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCTGCTTATCCTACGCCAGTGTGCGAGAAGAAATGCAAGGTGCAGAACCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA