Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttcaagcatattttctcacatgtcatggttaatttatgttgttcagaaagtgttttgctttgagcttcagttcttcatgtataatacggtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTCTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG

Basic information

species Oryza sativa
transcript LOC_Os05g16660.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g16660.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G028834_T03 (Zea mays), 3'ss of exon 6
--tcttcaagcatattttctcacatgtcatggt-taatttatgttgttcagaaagtgttttgctttgagcttcagttcttcatgtataatacggtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTCTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAA-ACTCTGAG
  |  |  |     |||||||  | ||  ||   || ||||| | ||  | |   ||||||  | | |   | |  ||    | | |  |  | | |||  || || || ||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||| ||||||||| || |  |||||     ||  |  | || 
ctttgtagaaacctttttctcttaggttctgaagtagtttatctagtataaagtttgtttttttctaa---ttatgtccatgttttttctctgatcttattagTTTTTCAAGTGGCGGTGAAGATGGTTATGTAAGGCTGCATCATTTTGATTCCGACTACTTCAGCATCAAGATGTAGATAAAGAACACCAGACTAACCCGA-

upper sequence: LOC_Os05g16660.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G143330_T01 (Zea mays), 3'ss of exon 6
-----tcttcaagcatattttctcacatgtcatggt-taatttatgttgttcagaaagtgttttgctttgagcttcagttcttcatgtataatacggtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTCTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG
     | |  |   |  |||||||    ||  |||  | |||| |    || ||||  | |||| ||   | || ||  | ||||| | |  ||   | |||  ||||| || ||||||||||||||||||||||||||| |||| |||||||||||||||||||| | |||||| || || |  |||||     |||  || |||
catgctttgtagataccttttctcttgcgttctggagttatttttaaattttagaagtttttttact---aactcca--tgttcat-tcttttatcttattattagCTTTTCAAGTGGTGGTGAAGATGGATATGTAAGGTTGCATCATTTTGATTCTGACTACTTTAGCATCAAAATGTAGATAAAGAACAGACGAA--TCAGAG

upper sequence: LOC_Os05g16660.1 (Oryza sativa), 3'ss of exon 6
lower sequence: AT2G46290.1 (Arabidopsis thaliana), 3'ss of exon 8
--tcttcaagcatattttctcacatgtcatggttaatttatgttgttca-gaaagtgttttgctttgagcttcagttcttcatgtataatacggtgt--taacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTCTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG
       ||  | ||||  |      | || | ||   |     ||| | || ||||||||   ||  ||||   | ||   ||| |  |    |||  |  ||| ||||| ||||| |||||||| || || || || ||||| |||||||| ||  | |||||||||||||||||||| |           ||    ||    
gtaaactaacaaaatttgattttgattgattgatacaatcctcagttgatgagagtgtttt---ttaggctttgttgctgagtgttttttggaatgtattttcagTTTCTCTAGTGGAGGTGAAGACGGCTACGTGAGACTGCATCATTTTGACTCCAATTACTTCAACATCAAGATTTAGATTCTTTGAACATGTCTTTCCATT

upper sequence: LOC_Os05g16660.1 (Oryza sativa), 3'ss of exon 6
lower sequence: AT2G46280.3 (Arabidopsis thaliana), 3'ss of exon 6
------------tcttcaagcatattttctcacatgtcatggttaatttatgttgttcagaaagtgttttgctttgagcttcagttcttcatgtataatacggtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTCTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG
              ||      |   ||     |    ||  | |  | |||  |||  ||  ||||   | |||| |||      ||   | | |   | |    |  ||| ||||| ||||| |||||||| || || || |||||||| |||||||| || ||||||||||||||||||||||| |    ||     ||||  ||    
gtaaattaacaacatttggattttgattgattgacacaatcctcacatgatgaggttttgagtgtgt---gttttg-gctctctcactgagtttgtggaatgtatatttcagTTTCTCTAGTGGAGGTGAAGACGGTTACGTGAGGCTGCATCATTTTGACTCCGACTACTTCAACATCAAGATTTAGATTCCGACTACTTGAACGTCAACC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88436120|gb|CI516656.1|CI516656
EST:     GATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88243408|gb|CI244530.1|CI244530
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86499895|gb|CI142528.1|CI142528
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86487945|gb|CI130578.1|CI130578
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86496419|gb|CI139052.1|CI139052
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88436059|gb|CI516595.1|CI516595
EST:     TTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: TTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86500620|gb|CI143253.1|CI143253
EST:     GGCCATTTTGGACCCATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88380233|gb|CI516220.1|CI516220
EST:     CCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: CCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86495231|gb|CI137864.1|CI137864
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88253886|gb|CI352512.1|CI352512
EST:     GCCATTTTGGACCAAATTAACGCACTGGCATTTAATCCTGATGGACAGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GCCATTTTGGACC-AATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88463857|gb|CI527184.1|CI527184
EST:     TAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: TAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|66915339|gb|CX102187.1|CX102187
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88419994|gb|CI516443.1|CI516443
EST:     TCCTGATGGACGGAG                         CTTCTCGANTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: TCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88321140|gb|CI532890.1|CI532890
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88303905|gb|CI512979.1|CI512979
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88380137|gb|CI516124.1|CI516124
EST:     TGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: TGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88471754|gb|CI409025.1|CI409025
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|87026422|gb|CI252376.1|CI252376
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88449484|gb|CI534043.1|CI534043
EST:     ATTAACGCACTGGCATTT-AT-CTGATGGAC-GAG                         CTTCTCGAGTGGTGTTTAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: ATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86413445|gb|CI067850.1|CI067850
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86883640|gb|CI328698.1|CI328698
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGGG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86429193|gb|CI075874.1|CI075874
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88303884|gb|CI512958.1|CI512958
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86413607|gb|CI019192.1|CI019192
EST:     TTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: TTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88690738|gb|CI734817.1|CI734817
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTCGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88462799|gb|CI519711.1|CI519711
EST:     TTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: TTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86436419|gb|CI118141.1|CI118141
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88286046|gb|CI515170.1|CI515170
EST:     CTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: CTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88304266|gb|CI515539.1|CI515539
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88261439|gb|CI365015.1|CI365015
EST:     -GCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88690154|gb|CI734233.1|CI734233
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88843443|gb|CI372343.1|CI372343
EST:     GCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88691326|gb|CI733910.1|CI733910
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86877402|gb|CI312766.1|CI312766
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGGG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86484664|gb|CI127297.1|CI127297
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86429713|gb|CI076394.1|CI076394
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88835916|gb|CI371021.1|CI371021
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88374230|gb|CI513317.1|CI513317
EST:     GACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88319498|gb|CI518342.1|CI518342
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86603949|gb|CI114723.1|CI114723
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGTCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|88227540|gb|CI227020.1|CI227020
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86419526|gb|CI054327.1|CI054327
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86414963|gb|CI069366.1|CI069366
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTTTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86496362|gb|CI138995.1|CI138995
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86835727|gb|CI348184.1|CI348184
EST:     TTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: TTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
EST: gi|86858704|gb|CI274995.1|CI274995
EST:     GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAG                         CTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC
genomic: GGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 69 (upstream exon), 54 (downstream exon)
Score: 31

ATTTTGCAAGAGGAAATTGGTGGTGTAAAAGGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaatattct ... gtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTCTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagaaagtgttttgctttgagcttcagttcttcatgtataatacggtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTCTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG
                                 atgtataata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcttcaagcatattttctcacatgtcatggttaatttatgttgttcagaaagtgttttgctttgagcttcagttcttcatgtataatacggtgttaacagCTTCTCGAGTGGTGGTGAAGATGGATATGTAAGGCTGCACCATTTTGATTCTGACTACTTCAACATCAAGATTTAAAGCAAGAAGTTGTGAAACTCTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - caagcat
- - - - - - - - - - - tgtcatg
- - - - - - - - - - - - - - - - - - -atgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtat