1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgttcttggtttaatttgctgagcccaggttgcctggatgaatatttatggtatatcatgtcattgcaactattaaaatggattatttatttgattgcagAAACGTAGGGAAGAGATGGAGAGGGTTGAGAAGGAGAAGCAGGCTGAAATCAGGAGCTACAAGAACCTGATGGTCCAAGAGAAGATGACTTCCAACAAGC
species | Oryza sativa |
transcript | LOC_Os05g13440.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGCTTAGAGATAAA AAACGTAGGGAAGAGATGGAGAGGGTTGAGAAGGAGAAGCAGGCTGAAATCEST: gi|88509681|gb|CI437187.1|CI437187
genomic: CTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGCTTAGAGATAAAgtaagttata ... ttgattgcagAAACGTAGGGAAGAGATGGAGAGGGTTGAGAAGGAGAAGCAGGCTGAAATC
EST: AAGGTGCAGCTTAGAGATAAA AAACGTAGGGAAGAGATGGAGAGGGTTGAGAAGGAGAAGCAGGCTGAAATCEST: gi|33808583|gb|CF330177.1|CF330177
genomic: AAGGTGCAGCTTAGAGATAAAgtaagttata ... ttgattgcagAAACGTAGGGAAGAGATGGAGAGGGTTGAGAAGGAGAAGCAGGCTGAAATC
EST: CTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGCTTAGAGATAAA AAACGTAGGGAAGAGATGGAGAGGGTTGAGAAGGAGAAGCAGGCTGAAATCEST: gi|88543372|gb|CI473375.1|CI473375
genomic: CTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGCTTAGAGATAAAgtaagttata ... ttgattgcagAAACGTAGGGAAGAGATGGAGAGGGTTGAGAAGGAGAAGCAGGCTGAAATC
EST: AAAGGCAGAGAGAAAGGTNCAGCTTAGAGATAAA AAACTTAGGGAAGAGATGGAGAGGGTTGAGAAGGAGAAGCAGGCTGAAATCEST: gi|88490389|gb|CI427661.1|CI427661
genomic: AAAGGCAGAGAGAAAGGTGCAGCTTAGAGATAAAgtaagttata ... ttgattgcagAAACGTAGGGAAGAGATGGAGAGGGTTGAGAAGGAGAAGCAGGCTGAAATC
EST: GTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGCTTAGAGATAAA AAACGTAGGGAAGAGATGGAGAGGGTTGAGAAGGAGAAGCAGGCTGAAATCEST: gi|88473127|gb|CI410398.1|CI410398
genomic: GTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGCTTAGAGATAAAgtaagttata ... ttgattgcagAAACGTAGGGAAGAGATGGAGAGGGTTGAGAAGGAGAAGCAGGCTGAAATC
EST: CAGCTTAGAGATAAA AAACGTAGGGAAGAGATNGAGAGGGTTGAGAAGGAGAAGCAGGCTGAAATCEST: gi|8858770|gb|AU096088.1|AU096088
genomic: CAGCTTAGAGATAAAgtaagttata ... ttgattgcagAAACGTAGGGAAGAGATGGAGAGGGTTGAGAAGGAGAAGCAGGCTGAAATC
EST: CTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGCTTAGAGATAAA AAACGTAGGGAAGAGATGGAGAGGGTTGAGAAGGAGAAGCAGGCTGAAATCEST: gi|396941371|gb|HO188580.1|HO188580
genomic: CTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGCTTAGAGATAAAgtaagttata ... ttgattgcagAAACGTAGGGAAGAGATGGAGAGGGTTGAGAAGGAGAAGCAGGCTGAAATC
EST: CTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGCTTAGAGATAAA AAACGTAGGGAAGAGATGGAGAGGCTTGAGAAGGAGAAGCAGGCTGAAATC
genomic: CTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGCTTAGAGATAAAgtaagttata ... ttgattgcagAAACGTAGGGAAGAGATGGAGAGGGTTGAGAAGGAGAAGCAGGCTGAAATC
ttatggtatatcatgtcattgcaactattaaaatggattatttatttgattgcagAAACGTAGGGAAGAGATGGAGAGGGTTGAGAAGGAGAAGCAGGCTGAAATCAGGAGCTACAAGAACCTGATGGTCCAAGAGAAGATGACTTCCAACAAGC
atttgat putative branch site (score: 14)
tttattt CT-rich tract
aactattaaaatggat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttcttggtttaatttgctgagcccaggttgcctggatgaatatttatggtatatcatgtcattgcaactattaaaatggattatttatttgattgcagAAACGTAGGGAAGAGATGGAGAGGGTTGAGAAGGAGAAGCAGGCTGAAATCAGGAGCTACAAGAACCTGATGGTCCAAGAGAAGATGACTTCCAACAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
-gttcttg
- - - - - - - -ttgctga
- - - - - - - - - - - - - - -ttgcctg
- - - - - - - - - - - - - - - - - - gatgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - atcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattgca