1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttagtagtacacctcagtattttgcaaagttgcaaaataatgcattgtcatttttctattttgtctaaactcaaacttgcacttgttttagATTTATGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGGTGTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAA
species | Oryza sativa |
transcript | LOC_Os05g06430.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGCGGTCACTGCAAGCATCTTGCTCCG ATTTATGAGAAGCTAGCTTCTEST: gi|58675064|gb|CK063751.1|CK063751
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagta ... cttgttttagATTTATGAGAAGCTAGCTTCT
EST: GTGCGGTCACTGCAAGCATCTTGCTCCG ATTTATGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGGTGTTGTTATTEST: gi|58684543|gb|CK073230.1|CK073230
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagta ... cttgttttagATTTATGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGGTGTTGTTATT
EST: GTGCGGTCACTGCAAGCATCTTGCTCCG ATTTATGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGGEST: gi|27577315|gb|CB000010.1|CB000010
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagta ... cttgttttagATTTATGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGG
EST: GTGTGGTCACTGCAAGCATCTTGCTCCG ATTTATGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGGTGTTGTTATTEST: gi|27577494|gb|CB000189.1|CB000189
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagta ... cttgttttagATTTATGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGGTGTTGTTATT
EST: GTGTGGTCACTGCAAGCATCTTGCTCCG ATTTATGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGGTGTTGTTATTEST: gi|58653948|gb|CK042628.1|CK042628
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagta ... cttgttttagATTTATGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGGTGTTGTTATT
EST: GTGCGGTCACTGCAAGCATCTTGCTCCG ATTGAGTGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGGTGTTGTTATEST: gi|58659841|gb|CK048521.1|CK048521
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagta ... cttgttttagATTTA-TGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGGTGTTGTTAT
EST: GTGCGGTCACTGCAAGCATCTTGCTCCG ATTTATGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGGTGTTGTTATTEST: gi|58690891|gb|CK079578.1|CK079578
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagta ... cttgttttagATTTATGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGGTGTTGTTATT
EST: GTGCGGTCACTGCAAGCATCTTGCTCCG ATTTATGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGGTGTTGTTATTEST: gi|12622813|gb|AU173026.1|AU173026
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagta ... cttgttttagATTTATGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGGTGTTGTTATT
EST: GTGTGGTCACTGCAAGCATCTTGCTCCG ATTTATGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGGTGTTGTTATT
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagta ... cttgttttagATTTATGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGGTGTTGTTATT
ataatgcattgtcatttttctattttgtctaaactcaaacttgcacttgttttagATTTATGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGGTGTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAA
gtctaaa putative branch site (score: 50)
cttgtttt putative PPT
tcatttttctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtagtacacctcagtattttgcaaagttgcaaaataatgcattgtcatttttctattttgtctaaactcaaacttgcacttgttttagATTTATGAGAAGCTAGCTTCTGTTTATAAGCAAGATGAGGGTGTTGTTATTGCCAATCTTGATGCTGACAAACACACTGCCTTGGCAGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG