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gtgattatatgttcatgtactaattttggaattccatcttaaagaaacttgcaaacttattgttacttctctaaacaactttacttgagtcatgaagGTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAAGGAAATTCCGTACTGGTCTTGCATTACAACCT
species | Oryza sativa |
transcript | LOC_Os05g03820.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGTTGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAG GTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAAEST: gi|33796283|gb|CF324008.1|CF324008
genomic: AAGTTGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAGgtgattatat ... agtcatgaagGTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAA
EST: AAGTTGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAG GTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAAGGAAATTCCGTACTEST: gi|55411431|gb|CV723807.1|CV723807
genomic: AAGTTGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAGgtgattatat ... agtcatgaagGTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAAGGAAATTCCGTACT
EST: GTTGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAG GTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAAGGAAATTCCGTACTEST: gi|58658531|gb|CK047211.1|CK047211
genomic: GTTGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAGgtgattatat ... agtcatgaagGTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAAGGAAATTCCGTACT
EST: AAGTTGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAG GTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAAGGAAATTCCGCACTEST: gi|218498945|gb|FG948066.1|FG948066
genomic: AAGTTGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAGgtgattatat ... agtcatgaagGTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAAGGAAATTCCGTACT
EST: AAGTT-G-TCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAG GTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAAGGAAATTCCATACTEST: gi|218500233|gb|FG945122.1|FG945122
genomic: AAGTTGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAGgtgattatat ... agtcatgaagGTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAAGGAAATTCCGTACT
EST: TGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTACAG GTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAAGGAAATTCCATACTEST: gi|29679436|gb|CB675711.1|CB675711
genomic: TGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAGgtgattatat ... agtcatgaagGTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAAGGAAATTCCGTACT
EST: AAGTTGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAG GTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAAGGAAATTCCGCACTEST: gi|29677970|gb|CB674245.1|CB674245
genomic: AAGTTGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAGgtgattatat ... agtcatgaagGTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAAGGAAATTCCGTACT
EST: AAGTTGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAG GTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAAGGACATTCCGTACT
genomic: AAGTTGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAGgtgattatat ... agtcatgaagGTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAAGGAAATTCCGTACT
agaaacttgcaaacttattgttacttctctaaacaactttacttgagtcatgaagGTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAAGGAAATTCCGTACTGGTCTTGCATTACAACCT
ctctaaa putative branch site (score: 74)
aaacttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattatatgttcatgtactaattttggaattccatcttaaagaaacttgcaaacttattgttacttctctaaacaactttacttgagtcatgaagGTTAATCTTGACTTCAGTTCAGAGCAAGATATGATAAGGAAATTCCGTACTGGTCTTGCATTACAACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA