1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaactggacaaaagctaaatttccttttattaccggaagatcccaaatgtgctactactatttttcatatctgctacagtaactgaaagtctgtaaccattgtgtcaatgctacaaaatctgaagGTGACGGTGTACATGGGAGACGGATGGCGATTCGACTTCCGCAAGACACATTTCGACAAATGCTCACCCCCAGACTTCTATGCAAGG
species | Oryza sativa |
transcript | LOC_Os05g03610.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATAAACTGTTTGATCCTACATCCAAACTACCAGTAAAGACAAGACTAAAG GTGACGGTGTACATGGGAGACGGATGGCGATTCGACTTCCGCAAGACACATEST: gi|29614364|gb|CB619377.1|CB619377
genomic: ATAAACTGTTTGATCCTACATCCAAACTACCAGTAAAGACAAGACTAAAGgtaaactgga ... aaatctgaagGTGACGGTGTACATGGGAGACGGATGGCGATTCGACTTCCGCAAGACACAT
EST: CAGTAAAGACAAGACTAAAG GTGACGGTGTACATGGGAGACGGATGGCGATTCGACTTCCGCAAGACACATEST: gi|29623983|gb|CB628994.1|CB628994
genomic: CAGTAAAGACAAGACTAAAGgtaaactgga ... aaatctgaagGTGACGGTGTACATGGGAGACGGATGGCGATTCGACTTCCGCAAGACACAT
EST: ATAAACTGTTTGATCCTACATCCAAACTACCAGTAAAGACAAGACTAAAG GTGACGGTGTACATGGGAGACGGATGGCGATTCGACTTCCGCAAGACACATEST: gi|3763488|gb|AU030240.1|AU030240
genomic: ATAAACTGTTTGATCCTACATCCAAACTACCAGTAAAGACAAGACTAAAGgtaaactgga ... aaatctgaagGTGACGGTGTACATGGGAGACGGATGGCGATTCGACTTCCGCAAGACACAT
EST: ATAAACTGTTTGATCCNACATCCAAACNACCAGTAAAGACAAGACTAAAG GTGACGGTGTACATGGGAGACGGATGGCGATTCG-CTTCCGCAAGACACATEST: gi|33799559|gb|CF325640.1|CF325640
genomic: ATAAACTGTTTGATCCTACATCCAAACTACCAGTAAAGACAAGACTAAAGgtaaactgga ... aaatctgaagGTGACGGTGTACATGGGAGACGGATGGCGATTCGACTTCCGCAAGACACAT
EST: ATAAACTGTTTGATCCTACATCCAAACTACCAGTAAAGACAAGACTAAAG GTGACGGTGTACATGGGAGACGGATGGCGATTCGACTTCCGCAAGACACATEST: gi|117229439|gb|CT859823.1|CT859823
genomic: ATAAACTGTTTGATCCTACATCCAAACTACCAGTAAAGACAAGACTAAAGgtaaactgga ... aaatctgaagGTGACGGTGTACATGGGAGACGGATGGCGATTCGACTTCCGCAAGACACAT
EST: ATAAACTGTTTGATCCTACATCCAAACTACCAGTAAAGACAAGACTAAAG GTGACGGTGTACATGGGAGACGGATGGCGATTCGACTTCCGCAAGACACAT
genomic: ATAAACTGTTTGATCCTACATCCAAACTACCAGTAAAGACAAGACTAAAGgtaaactgga ... aaatctgaagGTGACGGTGTACATGGGAGACGGATGGCGATTCGACTTCCGCAAGACACAT
ctgctacagtaactgaaagtctgtaaccattgtgtcaatgctacaaaatctgaagGTGACGGTGTACATGGGAGACGGATGGCGATTCGACTTCCGCAAGACACATTTCGACAAATGCTCACCCCCAGACTTCTATGCAAGG
tacaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaactggacaaaagctaaatttccttttattaccggaagatcccaaatgtgctactactatttttcatatctgctacagtaactgaaagtctgtaaccattgtgtcaatgctacaaaatctgaagGTGACGGTGTACATGGGAGACGGATGGCGATTCGACTTCCGCAAGACACATTTCGACAAATGCTCACCCCCAGACTTCTATGCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA