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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaacatctcttagcggtagcttccagaaaagcaagttatgtctgtttataggtctatagacataataagcctgctagttcactaaagttgggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG

Basic information

species Oryza sativa
transcript LOC_Os05g03480.4
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g03480.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G052630_T03 (Zea mays), 3'ss of exon 4
aaacatctcttagcggtagcttcc-----agaaaagcaagttatgtctgtttataggtctatagacataataagcctgctagttcactaaagttgggagttt-cagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG-----------------------
   ||   |  |   | | | ||       ||| ||| | || | | ||||| |   | |  || ||||| || | ||| | ||||   | ||||||  ||| |||||||| ||||||||||||||| ||||||| ||||||||||||||||| || |||||||| ||||| |||||||||||                       
--ccactccacaatcgcatcctctttgttggaagagctacttgtct-tgtttctc--tttgcagccataa-aaccttgccaattcatccatgttggggttttacagGTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCATTCATAATCGAGAAAGGGATGCCCGGGTACAGAACCACTCCATTATCTT

upper sequence: LOC_Os05g03480.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G381051_T03 (Zea mays), 3'ss of exon 6
aaacatctcttagcggtagcttccagaaaagcaagttatgtctgtttataggtctatagacataataagcctgctagttcactaaagttgggagttt-cagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG
                | |||      | |   | |    | || ||     |||  |  | |  ||  ||||||| ||||   | ||||||| ||| |||||||| || |||||||||||| ||||||| || |||||||||||||| || |||||||| ||||| |||||||||||
----------gtatttttgctcttcttacattcattcccctatgctt-----tctgcactcctgttat-cctgctaattcatccatgttgggattttacagGTTGTTTACGCAAAAACAGATCTAGCTGCAGGGTCAAAAGGAATAACTGCATTCATAATCGAGAAAGGGATGCCCGG

upper sequence: LOC_Os05g03480.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G052630_T02 (Zea mays), 3'ss of exon 5
aaacatctcttagcggtagcttcc-----agaaaagcaagttatgtctgtttataggtctatagacataataagcctgctagttcactaaagttgggagttt-cagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG
   ||   |  |   | | | ||       ||| ||| | || | | ||||| |   | |  || ||||| || | ||| | ||||   | ||||||  ||| |||||||| ||||||||||||||| ||||||| ||||||||||||||||| || |||||||| ||||| |||||||||||
--ccactccacaatcgcatcctctttgttggaagagctacttgtct-tgtttctc--tttgcagccataa-aaccttgccaattcatccatgttggggttttacagGTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCATTCATAATCGAGAAAGGGATGCCCGG

upper sequence: LOC_Os05g03480.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA11G15900.1 (Glycine max), 3'ss of exon 7
aaacatctcttagcggtagcttccagaaaagcaagttatgtctgtttataggtctatagacataataagcctgctagttcactaaagttgggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG
| | |     |     |    |  | ||    |  ||||    ||| | |  | |   || |    |   |   || || | |    |     |  ||||||||| ||||| |||||||| ||| ||||||| |||||||| || || || ||||| ||||||||||| ||||| ||
agaaacaggatgctcatgtaatataaaacttgattttattatagttcagacatatgctgagaatgcatagcacgtatttgattgtgttgaattgaatcagGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGG

upper sequence: LOC_Os05g03480.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA12G07570.1 (Glycine max), 3'ss of exon 7
aaacatctcttagcggtagcttccagaaaagcaagttatgtctgtttataggtctatagacataataagcctgctagttcactaaagttgggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG
| | |     |     |    |  | ||    |  ||||    ||| | |  | |   || |    |   |   || || | |    |     |  ||||||||| ||||| |||||||| ||| ||||||| |||||||| || || || ||||| ||||||||||| ||||| ||
agaaacaggatgctcatgtaatataaaactatattttattatagttcagacatatgctgagaatgcataacacgtatttgattgtgttgaattgaatcagGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29665694|gb|CB661969.1|CB661969
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29661037|gb|CB657312.1|CB657312
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29678947|gb|CB675222.1|CB675222
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29637530|gb|CB642539.1|CB642539
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29661524|gb|CB657799.1|CB657799
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29668355|gb|CB664630.1|CB664630
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29642007|gb|CB647014.1|CB647014
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|58588211|gb|CF986519.1|CF986519
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29664861|gb|CB661136.1|CB661136
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29661039|gb|CB657314.1|CB657314
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29669233|gb|CB665508.1|CB665508
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29662792|gb|CB659067.1|CB659067
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29663795|gb|CB660070.1|CB660070
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29637231|gb|CB642240.1|CB642240
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29642660|gb|CB647667.1|CB647667
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29663209|gb|CB659484.1|CB659484
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29642658|gb|CB647665.1|CB647665
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29671620|gb|CB667895.1|CB667895
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29670746|gb|CB667021.1|CB667021
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29664640|gb|CB660915.1|CB660915
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|58595349|gb|CF993657.1|CF993657
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29659705|gb|CB655980.1|CB655980
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29681462|gb|CB677737.1|CB677737
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29674356|gb|CB670631.1|CB670631
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29682069|gb|CB678344.1|CB678344
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29666865|gb|CB663140.1|CB663140
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29623029|gb|CB628040.1|CB628040
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29680931|gb|CB677206.1|CB677206
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGC
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGC
EST: gi|29657680|gb|CB653955.1|CB653955
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29664203|gb|CB660478.1|CB660478
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29674433|gb|CB670708.1|CB670708
EST:     TTAACGGGAATAAGATGCGGTGCACCAACGGGCCATCTGCTCATACACTG                         GTTGTGTATGCAAAAACAGATATGGCTGCTGGA
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGA
EST: gi|29661262|gb|CB657537.1|CB657537
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29614820|gb|CB619833.1|CB619833
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29643545|gb|CB648552.1|CB648552
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29658881|gb|CB655156.1|CB655156
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29657355|gb|CB653630.1|CB653630
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|38481523|gb|CF965612.1|CF965612
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29664257|gb|CB660532.1|CB660532
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATTTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|33683926|gb|CF312165.1|CF312165
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|33683556|gb|CF311795.1|CF311795
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29675356|gb|CB671631.1|CB671631
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29665695|gb|CB661970.1|CB661970
EST:     TAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29672429|gb|CB668704.1|CB668704
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29664256|gb|CB660531.1|CB660531
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29661229|gb|CB657504.1|CB657504
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29637680|gb|CB642689.1|CB642689
EST:     TCCACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29641738|gb|CB646745.1|CB646745
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29658317|gb|CB654592.1|CB654592
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29668395|gb|CB664670.1|CB664670
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|218479296|gb|FG957919.1|FG957919
EST:     CCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: CCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29680249|gb|CB676524.1|CB676524
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29637190|gb|CB642199.1|CB642199
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29680494|gb|CB676769.1|CB676769
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
EST: gi|29641375|gb|CB646382.1|CB646382
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAA
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAA
EST: gi|29661171|gb|CB657446.1|CB657446
EST:     TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTG                         GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG
genomic: TTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 65 (upstream exon), 51 (downstream exon)
Score: 77

TGTTGTCAGTATGAAGTGCAAAGCTGAGAAAGTAGATGGTGGTTATGTCATTAACGGGAATAAGATGTGGTGCACCAACGGGCCATCTGCTCAGACACTGgtaatgctct ... ggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttataggtctatagacataataagcctgctagttcactaaagttgggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG
                                  cactaaa  putative branch site (score: 77)
         tatagacataataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaacatctcttagcggtagcttccagaaaagcaagttatgtctgtttataggtctatagacataataagcctgctagttcactaaagttgggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA