1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcacatgagcttgctgttcttctcaaacttgacctgtccttttgctgaattgcccatgctctgccactgattttaattttaatggtttttgtttccccagGAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGCTTTGCTGAACCCTACATCAGCAGAGCCCATGGTGTGGCCATCCCCACTT
species | Oryza sativa |
transcript | LOC_Os05g02130.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGAAGCTGCTTG-CGGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGG GAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGCEST: gi|5443717|gb|AU062419.2|AU062419
genomic: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGGgtgagaacta ... gtttccccagGAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGC
EST: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGG GAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGCEST: gi|163927765|gb|EG712501.1|EG712501
genomic: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGGgtgagaacta ... gtttccccagGAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGC
EST: ATTTGGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGG GAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGCEST: gi|568960|gb|D39809.1|D39809
genomic: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGGgtgagaacta ... gtttccccagGAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGC
EST: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGG GAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGCEST: gi|33677416|gb|CF305655.1|CF305655
genomic: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGGgtgagaacta ... gtttccccagGAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGC
EST: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGG GAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGCEST: gi|38473861|gb|CF957993.1|CF957993
genomic: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGGgtgagaacta ... gtttccccagGAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGC
EST: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGG GAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGC
genomic: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGGgtgagaacta ... gtttccccagGAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGC
tgaattgcccatgctctgccactgattttaattttaatggtttttgtttccccagGAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGCTTTGCTGAACCCTACATCAGCAGAGCCCATGGTGTGGCCATCCCCACTT
ttttaat putative branch site (score: 8)
tttttgtttcccc putative PPT
tgattttaattttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacatgagcttgctgttcttctcaaacttgacctgtccttttgctgaattgcccatgctctgccactgattttaattttaatggtttttgtttccccagGAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGCTTTGCTGAACCCTACATCAGCAGAGCCCATGGTGTGGCCATCCCCACTT
- -catgagc
- - - - - -tgctgtt
- - - - - - - - - - - - - - -tgacctg
- - - - - - - - - - - - - - - - - - - - - tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - -gcccatg