1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctcagagctttggaaacaaataccccatttaggcatagttaatggattctcttgtgaacaataataataatttgaaagttgcttttatttgttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGATTGGATTCGTTTTGTAAAAACATAATGTCGTATGCAATAACAAATTCAG
species | Oryza sativa |
transcript | LOC_Os05g01250.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|55411056|gb|CV723432.1|CV723432
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: GCCTGCTGCACCAACGGGTCACACACCCGCGCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|33655179|gb|CF277793.1|CF277793
genomic: GCCTGCTGCACCAACGGGTCACACACCCGC-CCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|33662788|gb|CF293755.1|CF293755
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|88540264|gb|CI470295.1|CI470295
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|29687110|gb|CB683385.1|CB683385
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|27576216|gb|CA998910.1|CA998910
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|88472180|gb|CI409451.1|CI409451
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|88486183|gb|CI423454.1|CI423454
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|5003511|gb|AU068660.1|AU068660
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|88535886|gb|CI465601.1|CI465601
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TTCCTGCTGCACCCACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|33689676|gb|CF317915.1|CF317915
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|33655395|gb|CF278009.1|CF278009
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|117224782|gb|CT845909.1|CT845909
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|86870086|gb|CI318007.1|CI318007
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|88836570|gb|CI010826.1|CI010826
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|88834968|gb|CI370271.1|CI370271
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|27577821|gb|CB000516.1|CB000516
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|88470654|gb|CI407925.1|CI407925
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|88505656|gb|CI433162.1|CI433162
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|88964831|gb|CI084829.1|CI084829
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGAEST: gi|88507718|gb|CI435224.1|CI435224
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
EST: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAG GAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
genomic: TGCCTGCTGCACCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGgtacatggac ... gttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGA
attctcttgtgaacaataataataatttgaaagttgcttttatttgttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGATTGGATTCGTTTTGTAAAAACATAATGTCGTATGCAATAACAAATTCAG
aacaataataataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcagagctttggaaacaaataccccatttaggcatagttaatggattctcttgtgaacaataataataatttgaaagttgcttttatttgttggtgcagGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGATCCGTAGTTGATTGGATTCGTTTTGTAAAAACATAATGTCGTATGCAATAACAAATTCAG
- - - - - - -aaacaaa
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