Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acatgctatatatttgctctaaatctgtctgcatgccactttatgagttcaatagataaacacttaatatctgatgctgtcatgtcgcgtactttgctagGAAAATGTTCCAGGCAAGGATATTGATAAGGGAATGTTGGTGGTATCTAACATTGATTCTTCCATCTCCAATGATGATCTTCTCCAAATGCTCAGTGTTT

Basic information

species Oryza sativa
transcript LOC_Os05g01240.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58606065|gb|CK034098.1|CK034098
EST:     GCAAGCCTCTGGGGCTGATGAAACTTGATGTGCAATTTTCTTTTCCTAAG                         GAAAATGTTCCAGGCAAGGATATTGATAAGGGAATGTTGGTGGTATCTAAC
genomic: GCAAGCCTCTGGGGCTGATGAAACTTGATGTGCAATTTTCTTTTCCTAAGgtatgcataa ... actttgctagGAAAATGTTCCAGGCAAGGATATTGATAAGGGAATGTTGGTGGTATCTAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttcaatagataaacacttaatatctgatgctgtcatgtcgcgtactttgctagGAAAATGTTCCAGGCAAGGATATTGATAAGGGAATGTTGGTGGTATCTAACATTGATTCTTCCATCTCCAATGATGATCTTCTCCAAATGCTCAGTGTTT
                       atctgat  putative branch site (score: 4)
                                              ctttgct  putative PPT
          ataaacacttaatat  TA-rich tract