1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatattttctactgttctgtttgtagcaaagggaaaaagacctgcacgggttcactctttttgttttgttttttttttactgacgatattggattttgtgatcagGGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACCGTCATTACAATGACATCAGTGAGCTGTCTCCTCACCGCCTCCAAGAGA
species | Oryza sativa |
transcript | LOC_Os04g59040.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG GGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACEST: gi|33686066|gb|CF314305.1|CF314305
genomic: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatattttc ... ttgtgatcagGGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG GGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGEST: gi|58602895|gb|CK013423.1|CK013423
genomic: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatattttc ... ttgtgatcagGGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTG
EST: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG GGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACEST: gi|66915284|gb|CX102132.1|CX102132
genomic: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatattttc ... ttgtgatcagGGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGAGCAG AGTGAGAAGGATGACCAGATAATAGCAGTATGTGCTGATGATCCTGAATACEST: gi|27554006|gb|CA997906.1|CA997906
genomic: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatattttc ... ttgtgatcagGGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG GGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACEST: gi|55433023|gb|CV729535.1|CV729535
genomic: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatattttc ... ttgtgatcagGGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG GGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGAEST: gi|32948454|gb|BP185026.1|BP185026
genomic: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatattttc ... ttgtgatcagGGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGA
EST: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG GGTGAGAAGGATGACAAGATAATAGCAGTATGTGEST: gi|33681023|gb|CF309262.1|CF309262
genomic: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatattttc ... ttgtgatcagGGTGAGAAGGATGACAAGATAATAGCAGTATGTG
EST: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG GGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACEST: gi|33693190|gb|CF321429.1|CF321429
genomic: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatattttc ... ttgtgatcagGGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG GGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACEST: gi|58671895|gb|CK060581.1|CK060581
genomic: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatattttc ... ttgtgatcagGGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG GGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACEST: gi|86498605|gb|CI141238.1|CI141238
genomic: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatattttc ... ttgtgatcagGGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG GGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACEST: gi|55434349|gb|CV730296.1|CV730296
genomic: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatattttc ... ttgtgatcagGGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG GGTGAGAAGGATGACAAGATAATAGCA
genomic: GTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatattttc ... ttgtgatcagGGTGAGAAGGATGACAAGATAATAGCA
ttcactctttttgttttgttttttttttactgacgatattggattttgtgatcagGGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACCGTCATTACAATGACATCAGTGAGCTGTCTCCTCACCGCCTCCAAGAGA
tactgac putative branch site (score: 1)
tctttttgttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattttctactgttctgtttgtagcaaagggaaaaagacctgcacgggttcactctttttgttttgttttttttttactgacgatattggattttgtgatcagGGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACCGTCATTACAATGACATCAGTGAGCTGTCTCCTCACCGCCTCCAAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA