1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcagtgaacaaacctatctactaattcccattgggcaacagctccttatggaccaaataactgtttcatcagGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAG
species | Oryza sativa |
transcript | LOC_Os04g58580.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGEST: gi|58604165|gb|CK014693.1|CK014693
genomic: ATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGgtcagtgaac ... gtttcatcagGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGG
EST: ATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGEST: gi|29641676|gb|CB646683.1|CB646683
genomic: ATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGgtcagtgaac ... gtttcatcagGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGG
EST: ATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGEST: gi|88846893|gb|CI005872.1|CI005872
genomic: ATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGgtcagtgaac ... gtttcatcagGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGG
EST: TCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGEST: gi|8859293|gb|AU096611.1|AU096611
genomic: TCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGgtcagtgaac ... gtttcatcagGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGG
EST: ATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGG
genomic: ATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGgtcagtgaac ... gtttcatcagGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGG
ctactaattcccattgggcaacagctccttatggaccaaataactgtttcatcagGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAG
ctgtttc CT-rich tract
aaataact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgaacaaacctatctactaattcccattgggcaacagctccttatggaccaaataactgtttcatcagGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC