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...atatatacatcaagattagcacaggctgcccaaagttcctgagaacctcaaaataaaagatccattatattacttgctgacgtctctatttgaatatcagACAACAGGTGTTCGATCCATGACATTCAATCCTGATGGAAGATCTCTGTTGTGTGGGTTGCATGAAAGTTTAAAG
species | Oryza sativa |
transcript | LOC_Os04g58130.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTTTTGGGATTTGGAGACCTTTGAATTGATTGGGTCTACTGGACCTGAG ACAACAGGTGTTCGATCCATGACATTCAATCCTGATGGAAGATCTCTGTTGEST: gi|4714835|gb|AU055952.1|AU055952
genomic: AGTTTTGGGATTTGGAGACCTTTGAATTGATTGGGTCTACTGGACCTGAGgtatgtaaaa ... tgaatatcagACAACAGGTGTTCGATCCATGACATTCAATCCTGATGGAAGATCTCTGTTG
EST: AGTTTTGGGATTTGGAGACCTTTGAATTGATTGGGTCTACTGGACCTGAG ACAACAGGTGTTCGATCCATGACATTCAATCCTGATGGAAGATCTCTGTTGEST: gi|58612031|gb|CK039743.1|CK039743
genomic: AGTTTTGGGATTTGGAGACCTTTGAATTGATTGGGTCTACTGGACCTGAGgtatgtaaaa ... tgaatatcagACAACAGGTGTTCGATCCATGACATTCAATCCTGATGGAAGATCTCTGTTG
EST: AGTTTCGGGATTTGGAGACCTTTGAATTGATTGGGTCTACTGGACCTGAG ACAACAGGTGTTCGATCCATGACATTCAATCCTGATGGAAGATCTCTGTTG
genomic: AGTTTTGGGATTTGGAGACCTTTGAATTGATTGGGTCTACTGGACCTGAGgtatgtaaaa ... tgaatatcagACAACAGGTGTTCGATCCATGACATTCAATCCTGATGGAAGATCTCTGTTG
cctcaaaataaaagatccattatattacttgctgacgtctctatttgaatatcagACAACAGGTGTTCGATCCATGACATTCAATCCTGATGGAAGATCTCTGTTGTGTGGGTTGCATGAAAGTTTAAAG
tgctgac putative branch site (score: 22)
tctctattt CT-rich tract
aaataaaagatccatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatatacatcaagattagcacaggctgcccaaagttcctgagaacctcaaaataaaagatccattatattacttgctgacgtctctatttgaatatcagACAACAGGTGTTCGATCCATGACATTCAATCCTGATGGAAGATCTCTGTTGTGTGGGTTGCATGAAAGTTTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - -ggctgcc
- - - - - - - - - - - - - - - - - gttcctg
- - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgac