1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaaatcttatttatgccaagacagctaatgttatttggatggatttgacctaatagctacagtccaactaattgtgcctgggggcctattagtcggggctaacctgaatttcacgtgacagttgacacacttttcctctatgtcattgtaaagAAACTTTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACACAAGCTTCCTGTGAAGTAGATGGTGAAGGATGGTTTACTCTGTCTGAAG
species | Oryza sativa |
transcript | LOC_Os04g57210.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAGAAATATAACATTTGAGTCACTGTACACTGTTCGAACCATCAAAGAG AAACTTTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACAEST: gi|66925992|gb|CX112840.1|CX112840
genomic: AGAGAAATATAACATTTGAGTCACTGTACACTGTTCGAACCATCAAAGAGgtaaaatctt ... cattgtaaagAAACTTTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACA
EST: AGAGAAATATAACATTTGAGTCACTGTACACTGTTCGAACCATCAAAGAG AAACTTTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACAEST: gi|58589122|gb|CF987430.1|CF987430
genomic: AGAGAAATATAACATTTGAGTCACTGTACACTGTTCGAACCATCAAAGAGgtaaaatctt ... cattgtaaagAAACTTTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACA
EST: AGAGAAATATAACATTTGAGTCACTGTACACTGGGCGAACCATCAAAGAG AAAC-TTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACAEST: gi|29671066|gb|CB667341.1|CB667341
genomic: AGAGAAATATAACATTTGAGTCACTGTACACTGTTCGAACCATCAAAGAGgtaaaatctt ... cattgtaaagAAACTTTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACA
EST: AGAGAAATATAACATTTGAGTCACTGTACACTGTTCGAACCATCAAAGAG AAACTTTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACA
genomic: AGAGAAATATAACATTTGAGTCACTGTACACTGTTCGAACCATCAAAGAGgtaaaatctt ... cattgtaaagAAACTTTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACA
ctaacctgaatttcacgtgacagttgacacacttttcctctatgtcattgtaaagAAACTTTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACACAAGCTTCCTGTGAAGTAGATGGTGAAGGATGGTTTACTCTGTCTGAAG
cttttcctctatgtc CT-rich tract
attgtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatcttatttatgccaagacagctaatgttatttggatggatttgacctaatagctacagtccaactaattgtgcctgggggcctattagtcggggctaacctgaatttcacgtgacagttgacacacttttcctctatgtcattgtaaagAAACTTTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACACAAGCTTCCTGTGAAGTAGATGGTGAAGGATGGTTTACTCTGTCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG