1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatatttcacaagaatatgcattttcagcctacaagttgctttattatgccctaatatatcctttatcattgttgtcattaaagGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAGATCCGTGGGTACTTAGATCTTGTAATTGAAGGGAAGCTCCCACTGAATC
species | Oryza sativa |
transcript | LOC_Os04g56646.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAG GTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAGEST: gi|29619248|gb|CB624260.1|CB624260
genomic: ATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAGgtaatatttc ... gtcattaaagGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAG
EST: ATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAG GTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAGEST: gi|88985211|gb|CI006865.1|CI006865
genomic: ATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAGgtaatatttc ... gtcattaaagGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAG
EST: CTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAG GTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAGEST: gi|86414901|gb|CI069304.1|CI069304
genomic: CTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAGgtaatatttc ... gtcattaaagGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAG
EST: CAACAATAAGCACGCTTGCGACAGAG GTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAGEST: gi|86594361|gb|CI251233.1|CI251233
genomic: CAACAATAAGCACGCTTGCGACAGAGgtaatatttc ... gtcattaaagGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAG
EST: ATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAG GTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAGEST: gi|29619285|gb|CB624297.1|CB624297
genomic: ATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAGgtaatatttc ... gtcattaaagGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAG
EST: ATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAG GTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAG
genomic: ATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAGgtaatatttc ... gtcattaaagGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAG
ctacaagttgctttattatgccctaatatatcctttatcattgttgtcattaaagGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAGATCCGTGGGTACTTAGATCTTGTAATTGAAGGGAAGCTCCCACTGAATC
ccctaat putative branch site (score: 44)
taatatatcctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatttcacaagaatatgcattttcagcctacaagttgctttattatgccctaatatatcctttatcattgttgtcattaaagGTAACCAGCAAGCTTGCAGCCTTGAAAGGACTGGACGCAAGGCTCAGGGAGATCCGTGGGTACTTAGATCTTGTAATTGAAGGGAAGCTCCCACTGAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG