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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacggataacaatttgttgtgcagccacttcagcttacacttgtgtcactgactccattgcaaatttgcaactgctctgatgcagGCTGTGTATGCAAATGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGACCGATCGATCCAG

Basic information

species Oryza sativa
transcript LOC_Os04g54474.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58667915|gb|CK056601.1|CK056601
EST:     GAGCAAGAGCTTCAACGGGCCAGGCAGCAG                         GCTGTGTATGCAAATGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGA
genomic: GAGCAAGAGCTTCAACGGGCCAGGCAGCAGgtacacggat ... tctgatgcagGCTGTGTATGCAAATGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGA
EST: gi|38473305|gb|CF957437.1|CF957437
EST:     GGTTGAAACTAGCGCAGTTAGAGCAAGAGCTTCAACGGGCCAGGCAGCAG                         GCTGTGTATGCAAATGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGA
genomic: GGTTGAAACTAGCGCAGTTAGAGCAAGAGCTTCAACGGGCCAGGCAGCAGgtacacggat ... tctgatgcagGCTGTGTATGCAAATGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGA
EST: gi|29642525|gb|CB647532.1|CB647532
EST:     GGTTGAAACTAGCGCAGTTAGAGCAAGAGCTTCAACGGGCCAGGCAGCAG                         GCTGTGTATGCAAATGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGA
genomic: GGTTGAAACTAGCGCAGTTAGAGCAAGAGCTTCAACGGGCCAGGCAGCAGgtacacggat ... tctgatgcagGCTGTGTATGCAAATGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGA
EST: gi|29640853|gb|CB645860.1|CB645860
EST:     GGTTGAAACTAGCGCAGTTAGAGCAAGAGCTTCAACGGGCCAGGCAGCAG                         GCTGTGTATGCAAATGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGA
genomic: GGTTGAAACTAGCGCAGTTAGAGCAAGAGCTTCAACGGGCCAGGCAGCAGgtacacggat ... tctgatgcagGCTGTGTATGCAAATGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGA
EST: gi|29659308|gb|CB655583.1|CB655583
EST:     GGTTGAAACTAGCGCAGTTAGAGCAAGAGCTTCAACGGGCCAGGCAGCAG                         GCTGTGTATGCAAATGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGA
genomic: GGTTGAAACTAGCGCAGTTAGAGCAAGAGCTTCAACGGGCCAGGCAGCAGgtacacggat ... tctgatgcagGCTGTGTATGCAAATGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagcttacacttgtgtcactgactccattgcaaatttgcaactgctctgatgcagGCTGTGTATGCAAATGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGACCGATCGATCCAG
                                         ctgctct  CT-rich tract
                               aaattt  TA-rich tract