1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacatattgctttgcttcagatcaaatttccatccagtgttggatcattattacaagagtgctgtttggcactgaataaattgcatccctagttgaacataagagtcaatctttgcttttcctccagttaagcgagctaagaagtacgtatatcatacctgagcctgccttttctttgctcttatgaagCTTGCTGGAAAAAACTCACACCATATTATTGAGGCAACTTTCAAAGCATTTGCTAGAGCCCTTCGACAAGCAACAGAATATGACTTGCGCCGACGCGGCA
species | Oryza sativa |
transcript | LOC_Os04g52710.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCTGGGATGACACTTCACATCCGTCAG CTTGCTGGAAAAAACTCACACCATATTATTGAGGCAACTTTCAAAGCATTTEST: gi|89186200|gb|CI048069.1|CI048069
genomic: ATCTGGGATGACACTTCACATCCGTCAGgtacatattg ... tcttatgaagCTTGCTGGAAAAAACTCACACCATATTATTGAGGCAACTTTCAAAGCATTT
EST: TGGGATGACACTTCACATCCGTCAG CTTGCTGGAAAAAACTCACACCATATTATTGAGGCAACTTTCAAAGCATTTEST: gi|58666132|gb|CK054818.1|CK054818
genomic: TGGGATGACACTTCACATCCGTCAGgtacatattg ... tcttatgaagCTTGCTGGAAAAAACTCACACCATATTATTGAGGCAACTTTCAAAGCATTT
EST: TTGTGAATACATCTGGGATGACACTTCACATCCGTCAG CTTGCTGGAAAAAACTCACACCATATTATTGAGGCAACTTTCAAAGCATTTEST: gi|86504503|gb|CI147136.1|CI147136
genomic: TTGTGAATACATCTGGGATGACACTTCACATCCGTCAGgtacatattg ... tcttatgaagCTTGCTGGAAAAAACTCACACCATATTATTGAGGCAACTTTCAAAGCATTT
EST: TTCCAATCTCTTGTGAATACATCTGGGATGACACTTCACATCCGTCAG CTTGCTGGAAAAAACTCACACCATATTATTGAGGCAACTTTCAAAGCATTTEST: gi|89182904|gb|CI045662.1|CI045662
genomic: TTCCAATCTCTTGTGAATACATCTGGGATGACACTTCACATCCGTCAGgtacatattg ... tcttatgaagCTTGCTGGAAAAAACTCACACCATATTATTGAGGCAACTTTCAAAGCATTT
EST: GACACTTCACATCCGTCAG CTTGCTGGAAAAAACTCACACCATATTATTGAGGCAACTTTCAAAGCATTT
genomic: GACACTTCACATCCGTCAGgtacatattg ... tcttatgaagCTTGCTGGAAAAAACTCACACCATATTATTGAGGCAACTTTCAAAGCATTT
agctaagaagtacgtatatcatacctgagcctgccttttctttgctcttatgaagCTTGCTGGAAAAAACTCACACCATATTATTGAGGCAACTTTCAAAGCATTTGCTAGAGCCCTTCGACAAGCAACAGAATATGACTTGCGCCGACGCGGCA
cctgccttttctttgc CT-rich tract
tatatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatattgctttgcttcagatcaaatttccatccagtgttggatcattattacaagagtgctgtttggcactgaataaattgcatccctagttgaacataagagtcaatctttgcttttcctccagttaagcgagctaagaagtacgtatatcatacctgagcctgccttttctttgctcttatgaagCTTGCTGGAAAAAACTCACACCATATTATTGAGGCAACTTTCAAAGCATTTGCTAGAGCCCTTCGACAAGCAACAGAATATGACTTGCGCCGACGCGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA