Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaatgccttgctgccaagtgccaaccaaagctcttattgttatattcagcaaactggaggcatcatttgggttctaatatctcatatttccctttgcagATCTTTTTACAAGGGGAATAGATATCCAAGCTGTTAATGTTGTTATCAATTTTGATTTCCCCAAGAGCGCAGAAACATATCTCCATAGG

Basic information

species Oryza sativa
transcript LOC_Os04g45040.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58663869|gb|CK052555.1|CK052555
EST:     GGTTTTCCATGATTTTCGCAATGGTGCATGCAGGAACTTGGTTTGTACAG                         ATCTTTTTACAAGGGGAATAGATATCCAAGCTGTTAATGTTGTTATCAATT
genomic: GGTTTTCCATGATTTTCGCAATGGTGCATGCAGGAACTTGGTTTGTACAGgtatatagat ... ccctttgcagATCTTTTTACAAGGGGAATAGATATCCAAGCTGTTAATGTTGTTATCAATT
EST: gi|55411565|gb|CV723941.1|CV723941
EST:     GGTTTTCCATGATTTTCGCAATGGTGCATGCAGGAACTTGGTTTGTACAG                         ATCTTTTTACAAGGGGAATAGATATCCAAGCTGTTAATGTTGTTATCAATT
genomic: GGTTTTCCATGATTTTCGCAATGGTGCATGCAGGAACTTGGTTTGTACAGgtatatagat ... ccctttgcagATCTTTTTACAAGGGGAATAGATATCCAAGCTGTTAATGTTGTTATCAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcagcaaactggaggcatcatttgggttctaatatctcatatttccctttgcagATCTTTTTACAAGGGGAATAGATATCCAAGCTGTTAATGTTGTTATCAATTTTGATTTCCCCAAGAGCGCAGAAACATATCTCCATAGG
                           ttctaat  putative branch site (score: 2)
 tctcatatttcccttt  CT-rich tract
 taatatctcatattt  TA-rich tract