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gtgcattgttgtgtaaagcttttctctattatgatgagataaacaaaaaaatatttccccctggaattaataacacttttaatgatgttgagcagTGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCTGTTGCATATGTTGATGGCAGCCGTGGACGTCGGCCGATAGCTCATAGGC
species | Oryza sativa |
transcript | LOC_Os04g40040.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAG TGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCTEST: gi|29673126|gb|CB669401.1|CB669401
genomic: TGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAGgtgcattgtt ... tgttgagcagTGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCT
EST: CTGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAG TGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCTEST: gi|11442746|gb|BF430649.1|BF430649
genomic: CTGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAGgtgcattgtt ... tgttgagcagTGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCT
EST: CTGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAG TGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCTEST: gi|58690279|gb|CK078966.1|CK078966
genomic: CTGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAGgtgcattgtt ... tgttgagcagTGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCT
EST: CGGATA-TTTGTGGAATGGCAGAAG TGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCTEST: gi|58690776|gb|CK079463.1|CK079463
genomic: CGGATATTTTGTGGAATGGCAGAAGgtgcattgtt ... tgttgagcagTGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCT
EST: CTGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAG TGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCTEST: gi|428641|gb|D24793.1|D24793
genomic: CTGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAGgtgcattgtt ... tgttgagcagTGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCT
EST: CGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAG TGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCTEST: gi|33812562|gb|CF332169.1|CF332169
genomic: CGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAGgtgcattgtt ... tgttgagcagTGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCT
EST: CTGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAG TGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCTEST: gi|88348489|gb|CI629978.1|CI629978
genomic: CTGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAGgtgcattgtt ... tgttgagcagTGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCT
EST: ATTAACGGATATTTTGTGGAATGGCAGAAG TGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCTEST: gi|29675868|gb|CB672143.1|CB672143
genomic: ATTAACGGATATTTTGTGGAATGGCAGAAGgtgcattgtt ... tgttgagcagTGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCT
EST: CTGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAG TGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCTEST: gi|88592151|gb|CI710233.1|CI710233
genomic: CTGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAGgtgcattgtt ... tgttgagcagTGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCT
EST: TGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAG TGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCTEST: gi|88337375|gb|CI629665.1|CI629665
genomic: TGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAGgtgcattgtt ... tgttgagcagTGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCT
EST: ATTAACGGATATTTTGTGGAATGGCAGAAG TGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCTEST: gi|86821964|gb|CI309343.1|CI309343
genomic: ATTAACGGATATTTTGTGGAATGGCAGAAGgtgcattgtt ... tgttgagcagTGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCT
EST: CTGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAG TGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCTEST: gi|29636255|gb|CB641264.1|CB641264
genomic: CTGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAGgtgcattgtt ... tgttgagcagTGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCT
EST: CTGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAG TGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCT
genomic: CTGAGGGCCCGAGCTTCCGCATTAACGGATATTTTGTGGAATGGCAGAAGgtgcattgtt ... tgttgagcagTGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCT
aaacaaaaaaatatttccccctggaattaataacacttttaatgatgttgagcagTGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCTGTTGCATATGTTGATGGCAGCCGTGGACGTCGGCCGATAGCTCATAGGC
aattaataacactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcattgttgtgtaaagcttttctctattatgatgagataaacaaaaaaatatttccccctggaattaataacacttttaatgatgttgagcagTGGAACTTCCGTATTGGCTTCACCCCTAAAGAGGGTTTGGTCATCTATTCTGTTGCATATGTTGATGGCAGCCGTGGACGTCGGCCGATAGCTCATAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA