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gttagctgagttatttgtgatatgttttacatgtcaaagcacttccaactctcttatgttagctgctttggagtcattctactagtgttgcaacttccaattcattttcttcttccaagtaaatcaaatgcaacctcaatattcaaattttgatttaataaacaagctaaatgtgttctgaagGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCG
species | Oryza sativa |
transcript | LOC_Os04g39270.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAG GTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGEST: gi|4714825|gb|AU055942.1|AU055942
genomic: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGgttagctgag ... tgttctgaagGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAG
EST: AGTATATGTTGAAAANATGCAAAATACTTGGCATGGCTGCTTTAGTTGAG GTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGEST: gi|23513963|gb|BU673400.1|BU673400
genomic: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGgttagctgag ... tgttctgaagGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAG
EST: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAG GTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTC-AGEST: gi|29616384|gb|CB621396.1|CB621396
genomic: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGgttagctgag ... tgttctgaagGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAG
EST: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAG GTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGEST: gi|2796268|gb|AA749562.1|AA749562
genomic: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGgttagctgag ... tgttctgaagGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAG
EST: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAG GTGCATGATGAAEST: gi|4714826|gb|AU055943.1|AU055943
genomic: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGgttagctgag ... tgttctgaagGTGCATGATGAA
EST: AGTATATGTTGAAANTATGCAAAATACTTGGCATGGCTGCTTTAGTTGAG GTNCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGEST: gi|88986358|gb|CI033589.1|CI033589
genomic: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGgttagctgag ... tgttctgaagGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAG
EST: CTTGGCATGGCTGCTTTAGTTGAG GTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGEST: gi|88372744|gb|CI612672.1|CI612672
genomic: CTTGGCATGGCTGCTTTAGTTGAGgttagctgag ... tgttctgaagGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAG
EST: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAG GTGCATGATGAAAGGGAAATGEST: gi|29663297|gb|CB659572.1|CB659572
genomic: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGgttagctgag ... tgttctgaagGTGCATGATGAAAGGGAAATG
EST: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAG GTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGEST: gi|86849316|gb|CI297783.1|CI297783
genomic: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGgttagctgag ... tgttctgaagGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAG
EST: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAG GTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGEST: gi|30226600|gb|CB964492.1|CB964492
genomic: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGgttagctgag ... tgttctgaagGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAG
EST: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAG GTGCATGATGAGAGGGAAATGGACCGTGTGTAAGGGATAGATGGTGTCCAGEST: gi|14981037|gb|BI305728.1|BI305728
genomic: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGgttagctgag ... tgttctgaagGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAG
EST: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAG GTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTEST: gi|29615583|gb|CB620595.1|CB620595
genomic: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGgttagctgag ... tgttctgaagGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGT
EST: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAG GTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAG
genomic: AGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGgttagctgag ... tgttctgaagGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAG
tgcaacctcaatattcaaattttgatttaataaacaagctaaatgtgttctgaagGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCG
agctaaa putative branch site (score: 50)
aatattcaaattttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagctgagttatttgtgatatgttttacatgtcaaagcacttccaactctcttatgttagctgctttggagtcattctactagtgttgcaacttccaattcattttcttcttccaagtaaatcaaatgcaacctcaatattcaaattttgatttaataaacaagctaaatgtgttctgaagGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA