1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatattagtagagcagggaaaaattccactttttagttgttgttatcgcactgaaatcgtgtacattataaacatatattgttgtcactccttttgccagGAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCGCCAGTTGAAGCTGGTGATAGCAGCGGGAACAATACGCCAAAAGAAACAC
species | Oryza sativa |
transcript | LOC_Os04g35080.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGGGCATGTCATTCACATGCTTGAAGTTGATGATTTTCCCTACAGAGAT GAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCGEST: gi|29689056|gb|CB685331.1|CB685331
genomic: TTGGGCATGTCATTCACATGCTTGAAGTTGATGATTTTCCCTACAGAGATgtaagttaac ... cttttgccagGAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCG
EST: TTGGGCATGTCATTCACATGCTTGAAGTTGATGATTTTCCCTACAGAGAT GAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCGEST: gi|29683546|gb|CB679821.1|CB679821
genomic: TTGGGCATGTCATTCACATGCTTGAAGTTGATGATTTTCCCTACAGAGATgtaagttaac ... cttttgccagGAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCG
EST: TTGGGCATGTCATTCACATGCTTGAAGTTGATGATTTTCCCTACAGAGAT GAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCGEST: gi|86898909|gb|CI296147.1|CI296147
genomic: TTGGGCATGTCATTCACATGCTTGAAGTTGATGATTTTCCCTACAGAGATgtaagttaac ... cttttgccagGAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCG
EST: TTGGGCATGTCATTCACATGCTTGAAGTTGATGATTTTCCCTACAGAGAT GAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCGEST: gi|44665188|gb|CR278622.1|CR278622
genomic: TTGGGCATGTCATTCACATGCTTGAAGTTGATGATTTTCCCTACAGAGATgtaagttaac ... cttttgccagGAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCG
EST: TTGGGCATGTCATTCACATGCTTGAAGTTGATGATTTTCCCTACAGAGAT GAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCGEST: gi|29689055|gb|CB685330.1|CB685330
genomic: TTGGGCATGTCATTCACATGCTTGAAGTTGATGATTTTCCCTACAGAGATgtaagttaac ... cttttgccagGAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCG
EST: TTGGGCATGTCATTCACATGCTTGAAGTTGATGATTTTCCCTACAGAGAT GAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCGEST: gi|27578162|gb|CB000857.1|CB000857
genomic: TTGGGCATGTCATTCACATGCTTGAAGTTGATGATTTTCCCTACAGAGATgtaagttaac ... cttttgccagGAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCG
EST: TTGGGCATGTCATTCACATGCTTGAAGTTGATGATTTTCCCTACAGAGAT GAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCGEST: gi|88963549|gb|CI029345.1|CI029345
genomic: TTGGGCATGTCATTCACATGCTTGAAGTTGATGATTTTCCCTACAGAGATgtaagttaac ... cttttgccagGAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCG
EST: TTGGGCATGTCATTCACATGCTTGAAGTTGATGATTTTCCCTACAGAGAT GAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCG
genomic: TTGGGCATGTCATTCACATGCTTGAAGTTGATGATTTTCCCTACAGAGATgtaagttaac ... cttttgccagGAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCG
tcgcactgaaatcgtgtacattataaacatatattgttgtcactccttttgccagGAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCGCCAGTTGAAGCTGGTGATAGCAGCGGGAACAATACGCCAAAAGAAACAC
ttgtcactcctttt CT-rich tract
tacattataaacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatattagtagagcagggaaaaattccactttttagttgttgttatcgcactgaaatcgtgtacattataaacatatattgttgtcactccttttgccagGAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAATCGGGAGAAATACCGCCAGTTGAAGCTGGTGATAGCAGCGGGAACAATACGCCAAAAGAAACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - ggaaaaat
- - - - - - - - - - - - - - - - - - ttgttgt
- - - - - - - - - - - - - - - - - - - - - - - -gcactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaca