1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtacgcccaaaacaaacaacttcaatgctatccaaaaagtaccacgccacgtcatatgtgttaggaagtaggaacagaacatctgcagaacagctgtgttatttggaagatttctttttaagtcctccatttcatgttatatcactaaaatttgagatgatgtgcgtcccccagGATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCAGAGGATCCATTGTTTCTTCTATATACAAGTGGTAGCACAGGAAAGCCAA
species | Oryza sativa |
transcript | LOC_Os04g33190.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAG GATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGEST: gi|29637985|gb|CB642994.1|CB642994
genomic: TGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAGgtacgcccaa ... cgtcccccagGATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATG
EST: TGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAG GATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCAEST: gi|29627341|gb|CB632352.1|CB632352
genomic: TGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAGgtacgcccaa ... cgtcccccagGATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCA
EST: TGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAG GATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCAEST: gi|29629232|gb|CB634243.1|CB634243
genomic: TGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAGgtacgcccaa ... cgtcccccagGATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCA
EST: TGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAG GATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCAEST: gi|29667040|gb|CB663315.1|CB663315
genomic: TGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAGgtacgcccaa ... cgtcccccagGATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCA
EST: TGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAG GATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCAEST: gi|33817601|gb|CF334632.1|CF334632
genomic: TGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAGgtacgcccaa ... cgtcccccagGATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCA
EST: TGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAG GATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCAEST: gi|5701680|gb|AU062515.2|AU062515
genomic: TGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAGgtacgcccaa ... cgtcccccagGATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCA
EST: AGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAG GATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCAEST: gi|29641346|gb|CB646353.1|CB646353
genomic: AGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAGgtacgcccaa ... cgtcccccagGATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCA
EST: TGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAG GATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCAEST: gi|29677034|gb|CB673309.1|CB673309
genomic: TGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAGgtacgcccaa ... cgtcccccagGATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCA
EST: AGAAGACACAAAATGGACGTCTGGCAGAGACGTTTGGTGGCAG GATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCAEST: gi|29624451|gb|CB629462.1|CB629462
genomic: AGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAGgtacgcccaa ... cgtcccccagGATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCA
EST: TGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAG GATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCA
genomic: TGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAGgtacgcccaa ... cgtcccccagGATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCA
aagtcctccatttcatgttatatcactaaaatttgagatgatgtgcgtcccccagGATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCAGAGGATCCATTGTTTCTTCTATATACAAGTGGTAGCACAGGAAAGCCAA
cactaaa putative branch site (score: 30)
cgtccccc putative PPT
ttatatcactaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcccaaaacaaacaacttcaatgctatccaaaaagtaccacgccacgtcatatgtgttaggaagtaggaacagaacatctgcagaacagctgtgttatttggaagatttctttttaagtcctccatttcatgttatatcactaaaatttgagatgatgtgcgtcccccagGATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCAGAGGATCCATTGTTTCTTCTATATACAAGTGGTAGCACAGGAAAGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT