1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tagatgggtgatgaccggagagaaacaatgatgttatctatagaatacaagcatcggctaactctgtgcccatacaccttttaatttcttatgtaaacagGAGTCAGCAGAGCCGGATGCATTTTTCTGTTTCGTTGAGCTGCTTAGTGGATTTCGGGATAACTTTTGCAAACAGCTTGACAACAGTGTGGTGGGCATAC
species | Oryza sativa |
transcript | LOC_Os04g30880.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGCACCACTCTACTATGTTTTCAAGAATGATCCAGAAGAAAATAATGCT GAGTCAGCAGAGCCGGATGCATTTTTCTGTTTCGTTGAGCTGCTTAGTGGAEST: gi|29626498|gb|CB631509.1|CB631509
genomic: TGGCACCACTCTACTATGTTTTCAAGAATGATCCAGAAGAAAATAATGCTgtaagtgttt ... atgtaaacagGAGTCAGCAGAGCCGGATGCATTTTTCTGTTTCGTTGAGCTGCTTAGTGGA
EST: TGGCACCACTCTACTATGTTTTCAAGAATGATCCAGAAGAAAATAATGCT GAGTCAGCAGAGCCGGATGCATTTTTCTGTTTCGTTGAGCTGCTTAGTGGAEST: gi|88570676|gb|CI662049.1|CI662049
genomic: TGGCACCACTCTACTATGTTTTCAAGAATGATCCAGAAGAAAATAATGCTgtaagtgttt ... atgtaaacagGAGTCAGCAGAGCCGGATGCATTTTTCTGTTTCGTTGAGCTGCTTAGTGGA
EST: TGGCACCACTCTACTATGTTTTCAAGAATGATCCAGAAGAAAATAATGCT GAGTCAGCAGAGCCGGATGCATTTTTCTGTTTCGTTGAGCTGCTTAGTGGAEST: gi|86494334|gb|CI136967.1|CI136967
genomic: TGGCACCACTCTACTATGTTTTCAAGAATGATCCAGAAGAAAATAATGCTgtaagtgttt ... atgtaaacagGAGTCAGCAGAGCCGGATGCATTTTTCTGTTTCGTTGAGCTGCTTAGTGGA
EST: TTTTCAAGAATGATCCAGAAGAAAATAATGCT GAGTCAGCAGAGCCGGATGCATTTTTCTGTTTCGTTGAGCTGCTTAGTGGA
genomic: TTTTCAAGAATGATCCAGAAGAAAATAATGCTgtaagtgttt ... atgtaaacagGAGTCAGCAGAGCCGGATGCATTTTTCTGTTTCGTTGAGCTGCTTAGTGGA
tacaagcatcggctaactctgtgcccatacaccttttaatttcttatgtaaacagGAGTCAGCAGAGCCGGATGCATTTTTCTGTTTCGTTGAGCTGCTTAGTGGATTTCGGGATAACTTTTGCAAACAGCTTGACAACAGTGTGGTGGGCATAC
tttcttat CT-rich tract
ttttaatttcttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagatgggtgatgaccggagagaaacaatgatgttatctatagaatacaagcatcggctaactctgtgcccatacaccttttaatttcttatgtaaacagGAGTCAGCAGAGCCGGATGCATTTTTCTGTTTCGTTGAGCTGCTTAGTGGATTTCGGGATAACTTTTGCAAACAGCTTGACAACAGTGTGGTGGGCATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - ggtgatg
- - - - - - - - - - agaaaca
- - - - - - - - - - - - - -atgatgt
- - - - - - - - - - - - - - - - - - - - - - - -caagcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccataca