1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgtgtgctgctgctgctaattcttgcatttgttatggttctattgtacctgcacacttgcaatgtgttcaagaacatggtttgttgtgcttttgcagTGAGATTTATCGGCAAGTTGGAGGACGGCACTGTGTTTTCCAAGAAAGGGCATGATGGTGATGAGCCATTTGAGTTCAGGACAGATGAGGAGCAAGTCAT
species | Oryza sativa |
transcript | LOC_Os04g28420.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGGAAGGGGAGGGCTATGAGCGCCCTAACGATGCGAGCAGTAGTTAGAG TGAGATTTATCGGCAAGTTGGAGGAEST: gi|86424735|gb|CI063496.1|CI063496
genomic: AAGGAAGGGGAGGGCTATGAGCGCCCTAACGATG-GAGCAGTAGTTAGAGgtgtgtgctg ... gcttttgcagTGAGATTTATCGGCAAGTTGGAGGA
EST: CAAGGAAGGGGAGGGCTATGAGCGCCCTAACGATGGAGCAGTAGTTAGAG TGAGATTNATCGGCAAGTTGGAGGACGGCACTGTGTTTTCCAAGAAAGGGC
genomic: CAAGGAAGGGGAGGGCTATGAGCGCCCTAACGATGGAGCAGTAGTTAGAGgtgtgtgctg ... gcttttgcagTGAGATTTATCGGCAAGTTGGAGGACGGCACTGTGTTTTCCAAGAAAGGGC
ttgtacctgcacacttgcaatgtgttcaagaacatggtttgttgtgcttttgcagTGAGATTTATCGGCAAGTTGGAGGACGGCACTGTGTTTTCCAAGAAAGGGCATGATGGTGATGAGCCATTTGAGTTCAGGACAGATGAGGAGCAAGTCAT
tgctttt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgctgctgctgctaattcttgcatttgttatggttctattgtacctgcacacttgcaatgtgttcaagaacatggtttgttgtgcttttgcagTGAGATTTATCGGCAAGTTGGAGGACGGCACTGTGTTTTCCAAGAAAGGGCATGATGGTGATGAGCCATTTGAGTTCAGGACAGATGAGGAGCAAGTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG