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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtattatattctcctatacttttatatgtacatattccatcattgttgattgtgtataatatagtactgttcgagttacaaatataatactacaatttgtgtcaatctgaaaatgtgcaactctttgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCCAGAACCATCGCAATGAAATGAATGGTGAATTCTTCAAGGTACGATGCCA

Basic information

species Oryza sativa
transcript LOC_Os03g64020.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86884857|gb|CI314433.1|CI314433
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTCCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88518624|gb|CI446278.1|CI446278
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|33661981|gb|CF292948.1|CF292948
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88516103|gb|CI443757.1|CI443757
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|86882127|gb|CI325663.1|CI325663
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGATCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88285972|gb|CI515096.1|CI515096
EST:     TGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: TGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88965747|gb|CI006624.1|CI006624
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|33822703|gb|CF337158.1|CF337158
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88503660|gb|CI431166.1|CI431166
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88455197|gb|CI516835.1|CI516835
EST:     GTGTCTAGTGGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTNTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: GTGTCTAGT-GGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88378341|gb|CI516086.1|CI516086
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|86872892|gb|CI326889.1|CI326889
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88459338|gb|CI517016.1|CI517016
EST:     ATCCTGTCANTGTGTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATNACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88380110|gb|CI516097.1|CI516097
EST:     CCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: CCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|86865586|gb|CI330994.1|CI330994
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|3763560|gb|AU030312.1|AU030312
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|29684429|gb|CB680704.1|CB680704
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88513609|gb|CI441115.1|CI441115
EST:     TGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: TGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|86861130|gb|CI326610.1|CI326610
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|33821393|gb|CF336509.1|CF336509
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAGACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88374423|gb|CI515907.1|CI515907
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTGGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88304398|gb|CI515671.1|CI515671
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|86477381|gb|CI120014.1|CI120014
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|86890101|gb|CI320090.1|CI320090
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88904001|gb|CI006234.1|CI006234
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCTTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|33681927|gb|CF310166.1|CF310166
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88319547|gb|CI518391.1|CI518391
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88469241|gb|CI406512.1|CI406512
EST:     GTGGCGGTGACACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: GTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|86896793|gb|CI317331.1|CI317331
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88844776|gb|CI021351.1|CI021351
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|33679890|gb|CF308129.1|CF308129
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88476937|gb|CI414208.1|CI414208
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|86837305|gb|CI347761.1|CI347761
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88380083|gb|CI513673.1|CI513673
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88484444|gb|CI421715.1|CI421715
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88277853|gb|CI398655.1|CI398655
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACCAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88462515|gb|CI514647.1|CI514647
EST:     TAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: TAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|86862773|gb|CI331653.1|CI331653
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATG-GCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|88995899|gb|CI037190.1|CI037190
EST:     ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
EST: gi|86860511|gb|CI323436.1|CI323436
EST:     ATCCTGTCAGTGTGTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGA                         TTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC
genomic: ATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 75 (downstream exon)
Score: 49

GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGAgtatgtatta ... tgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCCAGAACCATCGCAATGAAATGAATGGTGAATTCTTCAAGGTACGATGCCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatataatactacaatttgtgtcaatctgaaaatgtgcaactctttgttttgcagTTGTAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCCAGAACCATCGCAATGAAATGAATGGTGAATTCTTCAAGGTACGATGCCA
                                        ctctttgtttt  CT-rich tract
          tacaattt  TA-rich tract