1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtggttttccttcttgatgatctgtttcaatgctctttagccaattttatacgttttctgttatctgctgaaagtattaggagtagactgcattttgtcaagtcagagcattgcatgacatcactggtctaacttggttttgttcattttcagGGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAG
species | Oryza sativa |
transcript | LOC_Os03g63090.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAG GGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCACEST: gi|87036117|gb|CI189564.1|CI189564
genomic: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAGgtggttttcc ... tcattttcagGGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCAC
EST: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAG GGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCACEST: gi|218502090|gb|FG953891.1|FG953891
genomic: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAGgtggttttcc ... tcattttcagGGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCAC
EST: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAG GGTTATGATATCAGTTTCCTGATAACAAACTAACACTGTGAGGACATGCACEST: gi|38477980|gb|CF962113.1|CF962113
genomic: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAGgtggttttcc ... tcattttcagGGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCAC
EST: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAG GGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCACEST: gi|86490261|gb|CI132894.1|CI132894
genomic: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAGgtggttttcc ... tcattttcagGGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCAC
EST: GCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAG GGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCAC
genomic: GCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAGgtggttttcc ... tcattttcagGGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCAC
caagtcagagcattgcatgacatcactggtctaacttggttttgttcattttcagGGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAG
gtctaac putative branch site (score: 2)
ttttgttcattttc putative PPT
ttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggttttccttcttgatgatctgtttcaatgctctttagccaattttatacgttttctgttatctgctgaaagtattaggagtagactgcattttgtcaagtcagagcattgcatgacatcactggtctaacttggttttgttcattttcagGGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA