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gtatacctttcgactatattctgttgaagttataggctgtctatataccctagaagttaattagccttctctctttcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGGCAAGAGAAGTATCTTCCAGTCCTCCTTATACTGACTATGTTTCCACCAG
species | Oryza sativa |
transcript | LOC_Os03g63020.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG AAAATCTGTTGGTGACAGATGGCEST: gi|58694135|gb|CK082822.1|CK082822
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGC
EST: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG AAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGGEST: gi|58656490|gb|CK045170.1|CK045170
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
EST: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG AAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGGEST: gi|58692426|gb|CK081113.1|CK081113
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
EST: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG AAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGGEST: gi|58675001|gb|CK063688.1|CK063688
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
EST: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG AAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGGEST: gi|117226423|gb|CT848659.1|CT848659
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
EST: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG AAAATCTGTTGGTGACAGATGGCACTGT-AAAATTGCTGACEST: gi|86848584|gb|CI293908.1|CI293908
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGAC
EST: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG AAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGGEST: gi|29656191|gb|CB652466.1|CB652466
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
EST: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG AAAATCTGTTGEST: gi|33381171|gb|CF196514.1|CF196514
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTG
EST: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG AAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGGEST: gi|29613119|gb|CB618132.1|CB618132
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
EST: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG AAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGGEST: gi|29663526|gb|CB659801.1|CB659801
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
EST: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAAACTG AAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGAC
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGAC
tataggctgtctatataccctagaagttaattagccttctctctttcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGGCAAGAGAAGTATCTTCCAGTCCTCCTTATACTGACTATGTTTCCACCAG
agttaat putative branch site (score: 4)
ttaattagccttctct CT-rich tract
aagttaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacctttcgactatattctgttgaagttataggctgtctatataccctagaagttaattagccttctctctttcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGGCAAGAGAAGTATCTTCCAGTCCTCCTTATACTGACTATGTTTCCACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT