1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctcttatttttttaggacgttggcattttgtctatttttctgtggttgtgtagatcatgactaatgccttccattattgttgctgttgttctatgaccagTTGGCAGCACGGAGGGAACCAACTTCGGATCCTACTAAATATACTGCTGCTGATGTTCGAATT
species | Oryza sativa |
transcript | LOC_Os03g62640.5 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGGCTTTGAAAAAG TTGGCAGCACGGAGGGAACCAACTTCGGATCCTACTAAATATACTGCTGCTEST: gi|29674744|gb|CB671019.1|CB671019
genomic: TGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGGCTTTGAAAAAGgtagatatcg ... ctatgaccagTTGGCAGCACGGAGGGAACCAACTTCGGATCCTACTAAATATACTGCTGCT
EST: TGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGGCTTTGAAAAAG TTGGCAGCACGGAGGGAACCAACTTCGGATCCTACTAAATATACTGCTGCTEST: gi|29621718|gb|CB626729.1|CB626729
genomic: TGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGGCTTTGAAAAAGgtagatatcg ... ctatgaccagTTGGCAGCACGGAGGGAACCAACTTCGGATCCTACTAAATATACTGCTGCT
EST: TGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGGCTTTGAAAAAG TTGGCAGCACGGAGGGAACCAACTTCGGATCCTACTAAATATACTGCTGCT
genomic: TGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGGCTTTGAAAAAGgtagatatcg ... ctatgaccagTTGGCAGCACGGAGGGAACCAACTTCGGATCCTACTAAATATACTGCTGCT
ttgtgtagatcatgactaatgccttccattattgttgctgttgttctatgaccagTTGGCAGCACGGAGGGAACCAACTTCGGATCCTACTAAATATACTGCTGCTGATGTTCGAATT
gactaat putative branch site (score: 2)
ttgttct putative PPT
attattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcttatttttttaggacgttggcattttgtctatttttctgtggttgtgtagatcatgactaatgccttccattattgttgctgttgttctatgaccagTTGGCAGCACGGAGGGAACCAACTTCGGATCCTACTAAATATACTGCTGCTGATGTTCGAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT