1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtactcttcttttcctcattgcatcttgtttcatccttacagtagcactcaacctcatttctgttttatcactgttatgtgcttgcttttctgcacctgcaaacctgtttgcaaacggtgattaatccgcaccatgttttcctagGGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAG
species | Oryza sativa |
transcript | LOC_Os03g58040.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGATGTCCTCATCCCGGCAGCACTTGGTGGAGTTATAAACAA GGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCAEST: gi|58680379|gb|CK069066.1|CK069066
genomic: TGATGTCCTCATCCCGGCAGCACTTGGTGGAGTTATAAACAAgtactcttct ... gttttcctagGGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCA
EST: GAAGAATGTGATGTCCTCATCCCGGCAGCACTTGGTGGAGTTATAAACAA GGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCAEST: gi|286451|gb|D15259.1|D15259
genomic: GAAGAATGTGATGTCCTCATCCCGGCAGCACTTGGTGGAGTTATAAACAAgtactcttct ... gttttcctagGGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCA
EST: GAAGAATGTGATGTCCTCATCCCGGCAGCACTTGGTGGAGTTATAAACAA GGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCAEST: gi|163923029|gb|EG712776.1|EG712776
genomic: GAAGAATGTGATGTCCTCATCCCGGCAGCACTTGGTGGAGTTATAAACAAgtactcttct ... gttttcctagGGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCA
EST: GAAGAATGTGATGTCCTCATCCCGGCAGCACTTGGTGGAGTTATAAACAA GGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCAEST: gi|29674432|gb|CB670707.1|CB670707
genomic: GAAGAATGTGATGTCCTCATCCCGGCAGCACTTGGTGGAGTTATAAACAAgtactcttct ... gttttcctagGGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCA
EST: GAAGAATGTGATGTCCTCATCCCGGCAGCACTTGGTGGAGTTATAAACAA GGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAACCCTEST: gi|8527504|gb|AU092319.1|AU092319
genomic: GAAGAATGTGATGTCCTCATCCCGGCAGCACTTGGTGGAGTTATAAACAAgtactcttct ... gttttcctagGGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCA
EST: ATGTCCTNATCCCGGCAGCACTTGGTGGAGTTATAAACAA GGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGNCTGNAAACCAEST: gi|58593842|gb|CF992150.1|CF992150
genomic: ATGTCCTCATCCCGGCAGCACTTGGTGGAGTTATAAACAAgtactcttct ... gttttcctagGGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCA
EST: GAGTTATAAACAA GGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAGCCAEST: gi|3760756|gb|C98010.1|C98010
genomic: GAGTTATAAACAAgtactcttct ... gttttcctagGGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCA
EST: AGAATTTGATGTCCTCATCCCGGCAGCATTTGGTGGA-TTATTAACAA GGACAACGC-AATGAGATCAAAGC-AAGTACATCATTGA-GCTTGCAAACCEST: gi|86594966|gb|CI258220.1|CI258220
genomic: AGAATGTGATGTCCTCATCCCGGCAGCACTTGGTGGAGTTATAAACAAgtactcttct ... gttttcctagGGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGC-TGCAAACC
EST: TCATCCCGGCAGCACTTGTTGGAGTTATTATACAA GGACGACGCAAATGAGATCAAAGCTAAGTACATCATTGAGGCTGCAAACCEST: gi|29679311|gb|CB675586.1|CB675586
genomic: TCATCCCGGCAGCACTTGGTGGAGTTA-TAAACAAgtactcttct ... gttttcctagGGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACC
EST: GAAGAATGTGATGTCCTCATCCCGGCAGCACTTGGTGGAGTTATAAACAA GGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCA
genomic: GAAGAATGTGATGTCCTCATCCCGGCAGCACTTGGTGGAGTTATAAACAAgtactcttct ... gttttcctagGGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCA
ctgcacctgcaaacctgtttgcaaacggtgattaatccgcaccatgttttcctagGGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAG
gattaat putative branch site (score: 3)
tgttttcct putative PPT
tgattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcttcttttcctcattgcatcttgtttcatccttacagtagcactcaacctcatttctgttttatcactgttatgtgcttgcttttctgcacctgcaaacctgtttgcaaacggtgattaatccgcaccatgttttcctagGGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG