1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctttatgtttacttgagttgaccttacaaattagggaagctgaacatttttcctgcaaaggctgtgtcacagatgaccaattattgccctggcttttcagGGATTTGGTAATGTTGGATCCTGGGCTGCTCAGCTGATCAGTGAAGCTGGTGGCAAGGTGATTGCCATCAGTGATGTCACTGGAGCTGTCAAGAACAGCA
species | Oryza sativa |
transcript | LOC_Os03g58040.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCTTGCAGAGCATGGCAAGGGCATTGCTGGCCAGCGTTTTGTAATACAG GGATTTGGTAATGTTGGATCCTGGGCTGCTCAGCTGATCAGTGAAGCTGGTEST: gi|58680379|gb|CK069066.1|CK069066
genomic: TGCTTGCAGAGCATGGCAAGGGCATTGCTGGCCAGCGTTTTGTAATACAGgtaaacaatt ... ggcttttcagGGATTTGGTAATGTTGGATCCTGGGCTGCTCAGCTGATCAGTGAAGCTGGT
EST: TGCTTGCAGAGCATGGCAAGGGCATTGCTGGCCAGCGTTTTGTAATACAG GGATTTGGTAATGTTGGATCCTGGGCTGCTCAGCTGATCAGTGAAGCTGGTEST: gi|163923029|gb|EG712776.1|EG712776
genomic: TGCTTGCAGAGCATGGCAAGGGCATTGCTGGCCAGCGTTTTGTAATACAGgtaaacaatt ... ggcttttcagGGATTTGGTAATGTTGGATCCTGGGCTGCTCAGCTGATCAGTGAAGCTGGT
EST: TGCTTGCAGAGCATGGCAAGGGCATTGCTGGCCAGCGTTTTGTAATACAG GGATTTGGTAATGTTGGATCCTGGGCTGCTCAGCTGATCAGTGAAGCTGGTEST: gi|29673988|gb|CB670263.1|CB670263
genomic: TGCTTGCAGAGCATGGCAAGGGCATTGCTGGCCAGCGTTTTGTAATACAGgtaaacaatt ... ggcttttcagGGATTTGGTAATGTTGGATCCTGGGCTGCTCAGCTGATCAGTGAAGCTGGT
EST: TGCTTGCAGAGCATGGCAAGGGCATTGCTGGCCAGCGTTTTGTAATACAG GGATTTGGTAATGTTGGATCCTGNGCTGCTCAGCTGATCAGTGAAGCTGGTEST: gi|29674431|gb|CB670706.1|CB670706
genomic: TGCTTGCAGAGCATGGCAAGGGCATTGCTGGCCAGCGTTTTGTAATACAGgtaaacaatt ... ggcttttcagGGATTTGGTAATGTTGGATCCTGGGCTGCTCAGCTGATCAGTGAAGCTGGT
EST: TGCTTGCAGAGCATGGCAAGGGCATTGCTGGCCAGCGTTTTGTAATACAG GGATTTGGTAATGTTGGATCCTGNGCTGCTCAGCTGATCAGTGAAGCTGGTEST: gi|163928511|gb|EG711396.1|EG711396
genomic: TGCTTGCAGAGCATGGCAAGGGCATTGCTGGCCAGCGTTTTGTAATACAGgtaaacaatt ... ggcttttcagGGATTTGGTAATGTTGGATCCTGGGCTGCTCAGCTGATCAGTGAAGCTGGT
EST: TGCTTGCAGAGCATGGCAAGGGCATTGCTGGCCAGCGTTTTGTAATACAG GGATTTGGTAATGTTGGATCCTGGGCTGCTCAGCTGATCAGTGAAGCTGGTEST: gi|88314120|gb|CI602452.1|CI602452
genomic: TGCTTGCAGAGCATGGCAAGGGCATTGCTGGCCAGCGTTTTGTAATACAGgtaaacaatt ... ggcttttcagGGATTTGGTAATGTTGGATCCTGGGCTGCTCAGCTGATCAGTGAAGCTGGT
EST: TGCTTGCAGAGCATGGCAAGGGCATTGCTGGCCAGCGTTTTGTAATACAG GGATTTGGTAATGTTGGATCCTGGGCTGCTCACCTGATCAGTGAAGCTGGT
genomic: TGCTTGCAGAGCATGGCAAGGGCATTGCTGGCCAGCGTTTTGTAATACAGgtaaacaatt ... ggcttttcagGGATTTGGTAATGTTGGATCCTGGGCTGCTCAGCTGATCAGTGAAGCTGGT
atttttcctgcaaaggctgtgtcacagatgaccaattattgccctggcttttcagGGATTTGGTAATGTTGGATCCTGGGCTGCTCAGCTGATCAGTGAAGCTGGTGGCAAGGTGATTGCCATCAGTGATGTCACTGGAGCTGTCAAGAACAGCA
cttttc CT-rich tract
aattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttatgtttacttgagttgaccttacaaattagggaagctgaacatttttcctgcaaaggctgtgtcacagatgaccaattattgccctggcttttcagGGATTTGGTAATGTTGGATCCTGGGCTGCTCAGCTGATCAGTGAAGCTGGTGGCAAGGTGATTGCCATCAGTGATGTCACTGGAGCTGTCAAGAACAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- ttatgtt
- - - - - - - - - - - - - - - - - -gaagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtgtc