1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaataatgatgcacttgtacctggtagcaataggctgtagtactgtattagatggatttggtgcttcatttttgctaatccaatcaacgtatttttgcagGTTGCCACCTTTATTGTTCAAAAGATTCTGCTTGATGATGTTGGGCTTCGCTACATATGTGCTACTGCTGAACGTTTCTTTGCCGTAGCCAGTGTTCTAT
species | Oryza sativa |
transcript | LOC_Os03g57130.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCCTCTGTGTCTCCGTACTATGGAGATGGGCAGTGAACTTTCGAAAACG GTTGCCACCTTTATTGTTCAAAAGATTCTGCTTGATGATGTTGGGCTTCGCEST: gi|44678276|gb|CR291710.1|CR291710
genomic: TTCCTCTGTGTCTCCGTACTATGGAGATGGGCAGTGAACTTTCGAAAACGgtgtgtagct ... atttttgcagGTTGCCACCTTTATTGTTCAAAAGATTCTGCTTGATGATGTTGGGCTTCGC
EST: TTCCTCTGTGTCTCCGTACTATGGAGATGGGCAGTGAACTTTCGAAAACG GTTGCCACCTTTATTGTTCAAAAGATTCTGCTTGATGATGTTGGGCTTCGCEST: gi|33800042|gb|CF325887.1|CF325887
genomic: TTCCTCTGTGTCTCCGTACTATGGAGATGGGCAGTGAACTTTCGAAAACGgtgtgtagct ... atttttgcagGTTGCCACCTTTATTGTTCAAAAGATTCTGCTTGATGATGTTGGGCTTCGC
EST: TTCCTCTGTGTCTCCGTACTATGGAGATGGGCAGTGAACTTTCGAAAACG GTTGCCACCTTTATTGTTCAAAAGATTCTGCTTGATGATGTTGGGCTTCGC
genomic: TTCCTCTGTGTCTCCGTACTATGGAGATGGGCAGTGAACTTTCGAAAACGgtgtgtagct ... atttttgcagGTTGCCACCTTTATTGTTCAAAAGATTCTGCTTGATGATGTTGGGCTTCGC
tattagatggatttggtgcttcatttttgctaatccaatcaacgtatttttgcagGTTGCCACCTTTATTGTTCAAAAGATTCTGCTTGATGATGTTGGGCTTCGCTACATATGTGCTACTGCTGAACGTTTCTTTGCCGTAGCCAGTGTTCTAT
tgctaat putative branch site (score: 23)
tattttt putative PPT
ttcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaataatgatgcacttgtacctggtagcaataggctgtagtactgtattagatggatttggtgcttcatttttgctaatccaatcaacgtatttttgcagGTTGCCACCTTTATTGTTCAAAAGATTCTGCTTGATGATGTTGGGCTTCGCTACATATGTGCTACTGCTGAACGTTTCTTTGCCGTAGCCAGTGTTCTAT
- - - tgatgca
- - - - - - - - gtacctg
- - - - - - - - - - - - -agcaata
- - - - - - - - - - - - - - - - -gctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatccaa