1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agaagcaaggcttcgcagtgcatttctcagaactgaagcagctactgattacaaaaaaatgtttattgtgaatgatatatgcaatatgtcattatcgtagGTTCTTGGAACAGAAGATTTCTACAATTACCTTGAAAAGTATGGTCTTGAGCTTGACCCGCAGCTTGAAAGACTTGTTGGAAG
species | Oryza sativa |
transcript | LOC_Os03g55490.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTTCTTTAATGGTCAGGATAACTACGACCAATTAGTCAAAATTACCGAG GTTCTTGGAACAGAAGATTTCTACAATTACCTTGAAAAGTATGGTCTTGAGEST: gi|29644831|gb|CB649838.1|CB649838
genomic: CTTTCTTTAATGGTCAGGATAACTACGACCAATTAGTCAAAATTACCGAGgtatgtctgt ... attatcgtagGTTCTTGGAACAGAAGATTTCTACAATTACCTTGAAAAGTATGGTCTTGAG
EST: CTTTCTTTAATGGTCAGGATAACTACGACCAATTAGTCAAAATTACCGAG GTTCTTGGAACAGAAGATTTCTACAATTACCTTGAAAAGTATGGTCTTGAGEST: gi|29643382|gb|CB648389.1|CB648389
genomic: CTTTCTTTAATGGTCAGGATAACTACGACCAATTAGTCAAAATTACCGAGgtatgtctgt ... attatcgtagGTTCTTGGAACAGAAGATTTCTACAATTACCTTGAAAAGTATGGTCTTGAG
EST: CTTTCTTTAATGGTCAGGATAACTACGACCAATTAGTCAAAATTACCGAG GTTCTTGGAACAGAAGATTTCTACAATTACCTTGAAAAGTATGGTCTTGAGEST: gi|66915335|gb|CX102183.1|CX102183
genomic: CTTTCTTTAATGGTCAGGATAACTACGACCAATTAGTCAAAATTACCGAGgtatgtctgt ... attatcgtagGTTCTTGGAACAGAAGATTTCTACAATTACCTTGAAAAGTATGGTCTTGAG
EST: CTTTCTTTAATGGTCAGGATAACTACGACCAATTAGTCAAAATTACCGAG GTTCTTGGAACAGAAGATTTCTACAACTTACCTTGGAAAAGTATGGTCTTGEST: gi|86595025|gb|CI260264.1|CI260264
genomic: CTTTCTTTAATGGTCAGGATAACTACGACCAATTAGTCAAAATTACCGAGgtatgtctgt ... attatcgtagGTTCTTGGAACAGAAGATTTCTACAA-TTACCTT-GAAAAGTATGGTCTTG
EST: CTTTCTTTAATGGTCAGGATAACTACGACCAATTAGTCAAAATTACCGAG GTTCTTGGAACAGAAGATTTCTACAATTACCTTGAAAAGTATGGTCTTGAG
genomic: CTTTCTTTAATGGTCAGGATAACTACGACCAATTAGTCAAAATTACCGAGgtatgtctgt ... attatcgtagGTTCTTGGAACAGAAGATTTCTACAATTACCTTGAAAAGTATGGTCTTGAG
tgattacaaaaaaatgtttattgtgaatgatatatgcaatatgtcattatcgtagGTTCTTGGAACAGAAGATTTCTACAATTACCTTGAAAAGTATGGTCTTGAGCTTGACCCGCAGCTTGAAAGACTTGTTGGAAG
tactgat putative branch site (score: 8)
aaaaaaatgtttattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaagcaaggcttcgcagtgcatttctcagaactgaagcagctactgattacaaaaaaatgtttattgtgaatgatatatgcaatatgtcattatcgtagGTTCTTGGAACAGAAGATTTCTACAATTACCTTGAAAAGTATGGTCTTGAGCTTGACCCGCAGCTTGAAAGACTTGTTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
-gaagcaa
- - - - - - - - -gtgcatt
- - - - - - - - - - - - - - - - ctgaagc
- - - - - - - - - - - - - - - - - - - - gctactg
- - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atatgca